Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2048 ATGGCATCGAGCTCGTCGAATTCTCCTTGTGCAGCCTGCAAATTTCTCCGGCGAAAATGCCAACCGGAGTGTGTATTCGCGCCGTATTTTCCGCCGGACCAGCCGCAGAAATTCGCTAATGTTCACAAGGTATTCGGAGCTAGCAATGTTACGAAACTCCTCAATGAATTGCATCCTCACCAGAGAGAAGACGCCGTCAATTCGCTCGCTTACGAAGCCGATATGCGCCTTCGTGACCCTGTTTATGGCTGCGTCGGTGTAATTTCTCTGCTCCAACACCAACTCTGTAAACTCCAAATGGATCTCACTTGCGCCAAATCCGAACTCTCCAAATACCAAAACCTAGGCATCGGGAACCACGCCGCACTGATTTCGCCGCCTTCCGCCTCTCACGGACAGCGGAACCACCAACCGTCGTTCAATTTTGCTAGAGATCAACCGCATAGCCTCTATCATGATCAATTTTTCCCTCGAGATCAACAACAGCAACAGATGATGCTCCGACGGAGCTTCGACGCCGGTAGTAACTACGACGCCGGACTTTTGGCCGTCAACGTCACCGCCAGCATCGGTAACCTCAGCCACCAGTTTCAGCAACCTCGCGCCGCCGCCGGAGACGATCGTCGCGGTACTCTCGATCATTCTTAG 648 52.93 MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHAALISPPSASHGQRNHQPSFNFARDQPHSLYHDQFFPRDQQQQQMMLRRSFDAGSNYDAGLLAVNVTASIGNLSHQFQQPRAAAGDDRRGTLDHS 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 57459279 57460897 - Hsped.08g20480.1 Hepe08g2048 578020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2048 215 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Hepe08g2048 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 151 - -
Hepe08g2048 215 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3080 Hepe-Chr2:79972513 Hepe08g2048 Hepe-Chr8:57459279 2.16e-55 dispersed
Hepe02g3306 Hepe-Chr2:82641826 Hepe08g2048 Hepe-Chr8:57459279 7.02e-45 dispersed
Hepe03g1460 Hepe-Chr3:71375974 Hepe08g2048 Hepe-Chr8:57459279 7.21e-29 dispersed
Hepe04g2027 Hepe-Chr4:75067510 Hepe08g2048 Hepe-Chr8:57459279 4.43e-34 dispersed
Hepe07g2205 Hepe-Chr7:66445971 Hepe08g2048 Hepe-Chr8:57459279 6.68e-51 dispersed
Hepe08g0433 Hepe-Chr8:3815202 Hepe08g2048 Hepe-Chr8:57459279 1.04e-21 dispersed
Hepe08g2048 Hepe-Chr8:57459279 Hepe10g0823 Hepe-Chr10:16976909 1.33e-57 dispersed
Hepe01g0656 Hepe-Chr1:68736318 Hepe08g2048 Hepe-Chr8:57459279 1.07e-42 wgd
Hepe05g0787 Hepe-Chr5:18624782 Hepe08g2048 Hepe-Chr8:57459279 1.10e-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56254 PF03195 LOB 4.00E-43 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2048 - - - 0.0