Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe08g2048 | ATGGCATCGAGCTCGTCGAATTCTCCTTGTGCAGCCTGCAAATTTCTCCGGCGAAAATGCCAACCGGAGTGTGTATTCGCGCCGTATTTTCCGCCGGACCAGCCGCAGAAATTCGCTAATGTTCACAAGGTATTCGGAGCTAGCAATGTTACGAAACTCCTCAATGAATTGCATCCTCACCAGAGAGAAGACGCCGTCAATTCGCTCGCTTACGAAGCCGATATGCGCCTTCGTGACCCTGTTTATGGCTGCGTCGGTGTAATTTCTCTGCTCCAACACCAACTCTGTAAACTCCAAATGGATCTCACTTGCGCCAAATCCGAACTCTCCAAATACCAAAACCTAGGCATCGGGAACCACGCCGCACTGATTTCGCCGCCTTCCGCCTCTCACGGACAGCGGAACCACCAACCGTCGTTCAATTTTGCTAGAGATCAACCGCATAGCCTCTATCATGATCAATTTTTCCCTCGAGATCAACAACAGCAACAGATGATGCTCCGACGGAGCTTCGACGCCGGTAGTAACTACGACGCCGGACTTTTGGCCGTCAACGTCACCGCCAGCATCGGTAACCTCAGCCACCAGTTTCAGCAACCTCGCGCCGCCGCCGGAGACGATCGTCGCGGTACTCTCGATCATTCTTAG | 648 | 52.93 | MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHAALISPPSASHGQRNHQPSFNFARDQPHSLYHDQFFPRDQQQQQMMLRRSFDAGSNYDAGLLAVNVTASIGNLSHQFQQPRAAAGDDRRGTLDHS | 215 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 57459279 | 57460897 | - | Hsped.08g20480.1 | Hepe08g2048 | 578020 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe08g2048 | 215 | ProSiteProfiles | LOB domain profile. | 8 | 109 | IPR004883 | - | |
Hepe08g2048 | 215 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 7 | 151 | - | - | |
Hepe08g2048 | 215 | Pfam | Lateral organ boundaries (LOB) domain | 9 | 106 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g3080 | Hepe-Chr2:79972513 | Hepe08g2048 | Hepe-Chr8:57459279 | 2.16e-55 | dispersed | |
Hepe02g3306 | Hepe-Chr2:82641826 | Hepe08g2048 | Hepe-Chr8:57459279 | 7.02e-45 | dispersed | |
Hepe03g1460 | Hepe-Chr3:71375974 | Hepe08g2048 | Hepe-Chr8:57459279 | 7.21e-29 | dispersed | |
Hepe04g2027 | Hepe-Chr4:75067510 | Hepe08g2048 | Hepe-Chr8:57459279 | 4.43e-34 | dispersed | |
Hepe07g2205 | Hepe-Chr7:66445971 | Hepe08g2048 | Hepe-Chr8:57459279 | 6.68e-51 | dispersed | |
Hepe08g0433 | Hepe-Chr8:3815202 | Hepe08g2048 | Hepe-Chr8:57459279 | 1.04e-21 | dispersed | |
Hepe08g2048 | Hepe-Chr8:57459279 | Hepe10g0823 | Hepe-Chr10:16976909 | 1.33e-57 | dispersed | |
Hepe01g0656 | Hepe-Chr1:68736318 | Hepe08g2048 | Hepe-Chr8:57459279 | 1.07e-42 | wgd | |
Hepe05g0787 | Hepe-Chr5:18624782 | Hepe08g2048 | Hepe-Chr8:57459279 | 1.10e-29 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56254 | PF03195 | LOB | 4.00E-43 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe08g2048 | - | - | - | 0.0 |