Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2070 ATGAAGACGCCGGCGAACGGTCTCGCCGGTGCCGTTTCCTCCGCCGCTGGGCCTAATTCATGCGAAGGTGGAATGGAGAAGAAGATCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTCGTCAACCTCCCGCCGGCCGGTTACCACGTGGTGTATTTTCCACAAGGCCATAGCGAACAGGTTGCAGCATCTTTGAAGAAAGATGCGGATGCCCAAATCCCAAACTACCCAAATCTTCCTTCCAAGTTACTTTGTTTGCTTCATAATGTAACATTACATGCTGACCCAGAAACAGATGAAGTATATGCTCAAATGACACTACTACCAGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCAGATCTATCTCTCAAGTCTAATAAGCCTCAACCAGAGTTCTTCTGTAAAACATTGACTGCAAGTGACACGAGCACTCATGGCGGGTTCTCCGTGCCACGTCGTGCTGCAGAGAAGATCTTCCCCCCTCTTGATTTCTCAATGCAACCACCTGCACAAGAGCTTGTTGCTAAGGATTTGCATGATATTGTATGGACTTTCCGTCACATATATCGAGGACAACCAAAACGTCATTTGCTGACAACCGGTTGGAGCTTATTTGTTAGTGGAAAGAGACTTCTTGCTGGTGATTCAGTTTTGTTCATAAGAGATGATAAACAACAGCTTCTATTGGGCATTAGGCGAGCGAACAGGCAACCGACAAACTTATCGTCATCAGTGTTGTCAACTGATAGTATGCATATTGGTATTCTTGCAGCCGCTGCTCATGCTGCTGCAAACAACAGCCCTTTCACGGTCTTCTACAACCCGAGGGCAAGTCCTTCAGAATTTGTCATTCCTCTTGCCAAATACTACAAGGCAGTGTCTGCAAACCAAATATCACTTGGCATGCGCTTCAGAATGATGTTCGAGACGGAAGAATCGGGAACTAGAAGGTATATGGGCACTATCACAGGTATAAGTGATCTTGATGCTGTCAGATGGAAGGGCTCACAATGGCGTAATCTACAGGTTGGGTGGGATGAGTCGACCGGAGGAGAAAGACGAAACCGAGTCTCAATATGGGAGATCGAACCTGTTATTGCTCCATTTTTCATTTGCCCCCCTCCTTTTCTGAGATCGAAACGTCCGAGGCAACCGGGAATGCCAGATGACGACTCCGATTTGGATGGATTATTTAAAAGAACAATGTTTGGTGACGATTTCTGCATGAAAGATCCACAGGGATATCCCGGCCTAAACTTAGTTCAATGGATGAATATGCAAAACCCTTCACTCTCTAATTCGATGCAGCCAAATTACATGCATTCGTTTTCTGGGTCTATGCTTCCAAACCTTGGTGGAGTCGATATTTCTCGACAACTTGGCATGTCGAATACACAAATTCCTCAATCAAACAACATGCAGTTCAATGCACAAAGGCTACTTTCTCAAGCTCAACAGTTAGATCAGCTGCCTAAGCTACCGTCAAGTATGAACTCGTTGGGGTCGGTTGTGCAGCAACCACAACAGTTGGATGATATGTCTCAGCAGACCCGGCAGAATTTGATTAACCAAAACGCGGTCTCGAGTCAGATTCAGGCTCAAATAATGCAGCAGCCTCACAGTAATGGGATCCTACAGCAGCAAACCGCTTTGCAAAATCAGCAGCTTCAGAGAAGCCTCCCTCAGAACCTGCAAATGCAACAGCATCAGCAAATTTTGGGTCAGAATCAACAGCAGAATATGAATCAGTCCCCGCTCCCAGATCAGTTAAATCATCAGTTGCAAATGTCGGATAATCAGGTTCAAATGCAGATGTTGCAGAAGTTTCAGCAGCAGCAGCAGCAGCAATCACTTTTGGCTCAGCAGTCTGCTCTTCAGCCTGCTCAACTCGCCCAACTACCGGAACAGCAGAGACAGTCTGTAGACATGTCCCAAAGCTTTTCCAGGTCCATGTCGTCTAACCAAATGCTTGACATGCCTCAATCTACCCCAGCTGCCGTCCCTCCATCAAATGTGTTACCTCAGCAGGTAGCAAAGAGCAATGGCCAGGCAAATAACCGATTCTCGAATCAGCATTTGCAGCCGAAACTTCCACAACTACAGCAACCGCTTCCATCTACTGTACTTTCTGATATGTCTAGGCCAATGGGACTTCCTCCTACCCAAACAAACAATCAGCTCTCAGCAGCTACTAGTAGTGTAATAACCGGAGCAGCAGGGGCCGGCCAATCTGGAATCACTGATGACATACCATCTTGCTCCACGTCACCTTCCACTAATAACTGTCCAAGTTTGGTTCAACCGATAACGAATGGAAGGGTTCATCGAAGCATGGGGTTGGTTGATGATGTTGCTCAATCTGCTGCAACAATCTTCAATCCAAATACTTTGGATACCATGTCACCAAATGCCAACTTACTTAATAAAGATTTTCAACAGAAAACTGCTGTTAAACCTTCACTGAATATTTCCAAGAATCAAAACCATGGAATTTTTGCACAACAAACTTTCTTGAGCGGTGTCGTTGCGCAGACGGATTTCTTAGACACGTCGTCGTCCACAACCTCGGCTTGCCTTTCTCAGAATGACGCTCAGTTGCAGCAGAATAACATGATGTCTTTCAACTCACAGCCAATGTTGTTTAGAGATGGTACTCAGGATTTGGAAGTACCGACAGATCTTCATAACATTCCATACGGGACTAATGTCGATGGACAATTGGTAGCGCAATTAAATTCTGATCCTTTGTTAAACAAGGACATTGGAGGGTTGGGGAAGGATTTCTCCAACAATTTTTCTTCCGGGGACATGCTCGCCACCTACGATGCTCAGAAAGATCCTCAACAAGAAATTTCTTCCTCTATAGTTTCACAATCATTTGGTATTCCGGACATGACGTTTAATTCCATGGATTCAACGATAAACGATAATGCATTCTTGAATAGAAACCAATGGGCCCCTCCGCCTCCGTTTCAGCGTATGCGAACCTACACCAAGGTTTACAAACGTGGAGCTGTTGGGAGATCTATTGATATCACTCGTTACTCGGGTTATGATGAGCTTAAACAAGACCTTGCCCGTAGGTTTGGTATCGAGGGACAATTGGAGGACAGGCAAAAGATAGGCTGGAAACTTGTTTATGTGGATCATGAAAATGATGTTTTACTGGTTGGCGACGACCCTTGGGAGGACTTTGTGAACTGCGTACGGAGCATCAAGATCCTCTCCCCACAGGAAGTCCAACAAATGAGCTTGGATGGAGATTTTGGCAACGGGGTCCTACCGAACCAAGCCTGCAGTAGCTCAGATGGTGGAAATGCTTAA 3336 45.77 MKTPANGLAGAVSSAAGPNSCEGGMEKKIINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLKKDADAQIPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLLPVPSFDKDALLRSDLSLKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDIVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDDKQQLLLGIRRANRQPTNLSSSVLSTDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDAVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPPPFLRSKRPRQPGMPDDDSDLDGLFKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNSMQPNYMHSFSGSMLPNLGGVDISRQLGMSNTQIPQSNNMQFNAQRLLSQAQQLDQLPKLPSSMNSLGSVVQQPQQLDDMSQQTRQNLINQNAVSSQIQAQIMQQPHSNGILQQQTALQNQQLQRSLPQNLQMQQHQQILGQNQQQNMNQSPLPDQLNHQLQMSDNQVQMQMLQKFQQQQQQQSLLAQQSALQPAQLAQLPEQQRQSVDMSQSFSRSMSSNQMLDMPQSTPAAVPPSNVLPQQVAKSNGQANNRFSNQHLQPKLPQLQQPLPSTVLSDMSRPMGLPPTQTNNQLSAATSSVITGAAGAGQSGITDDIPSCSTSPSTNNCPSLVQPITNGRVHRSMGLVDDVAQSAATIFNPNTLDTMSPNANLLNKDFQQKTAVKPSLNISKNQNHGIFAQQTFLSGVVAQTDFLDTSSSTTSACLSQNDAQLQQNNMMSFNSQPMLFRDGTQDLEVPTDLHNIPYGTNVDGQLVAQLNSDPLLNKDIGGLGKDFSNNFSSGDMLATYDAQKDPQQEISSSIVSQSFGIPDMTFNSMDSTINDNAFLNRNQWAPPPPFQRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGVLPNQACSSSDGGNA 1111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 58170051 58177688 - Hsped.08g20700.1 Hepe08g2070 578042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2070 1111 Pfam Auxin response factor 263 346 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe08g2070 1111 Gene3D - 301 371 - -
Hepe08g2070 1111 FunFam Auxin response factor 994 1088 - -
Hepe08g2070 1111 MobiDBLite consensus disorder prediction 567 594 - -
Hepe08g2070 1111 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 1090 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe08g2070 1111 Gene3D - 995 1088 - -
Hepe08g2070 1111 ProSiteProfiles PB1 domain profile. 999 1084 IPR053793 -
Hepe08g2070 1111 Pfam AUX/IAA family 997 1084 IPR033389 -
Hepe08g2070 1111 SUPERFAMILY CAD & PB1 domains 1012 1078 - -
Hepe08g2070 1111 Gene3D - 135 238 IPR015300 -
Hepe08g2070 1111 ProSiteProfiles B3 DNA-binding domain profile. 137 239 IPR003340 GO:0003677(InterPro)
Hepe08g2070 1111 FunFam Auxin response factor 301 372 - -
Hepe08g2070 1111 MobiDBLite consensus disorder prediction 1 20 - -
Hepe08g2070 1111 CDD B3_DNA 136 228 IPR003340 GO:0003677(InterPro)
Hepe08g2070 1111 SMART B3_2 137 239 IPR003340 GO:0003677(InterPro)
Hepe08g2070 1111 Pfam B3 DNA binding domain 137 238 IPR003340 GO:0003677(InterPro)
Hepe08g2070 1111 MobiDBLite consensus disorder prediction 496 519 - -
Hepe08g2070 1111 FunFam Auxin response factor 135 239 - -
Hepe08g2070 1111 MobiDBLite consensus disorder prediction 634 693 - -
Hepe08g2070 1111 SUPERFAMILY DNA-binding pseudobarrel domain 128 266 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2070 Hepe-Chr8:58170051 Hepe08g2709 Hepe-Chr8:69072305 7.18e-289 dispersed
Hepe08g2070 Hepe-Chr8:58170051 Hepe07g1742 Hepe-Chr7:59763079 4.05e-185 transposed
Hepe08g2070 Hepe-Chr8:58170051 Hepe04g2022 Hepe-Chr4:75005464 8.51e-185 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56256 PF02309 AUX_IAA 2.20E-07 CL0072 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2070 - - - 0.0