Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2086 ATGGAGGATATTCTGGATGATTATCGGTACTATTGGGAAACGAACATGTTTCTGCAGACGGAAGAGATCGACAGTTGGGGACTGGACGAAGCATTCTACGGTTCTTACGATTCGAGCTCGCCGGACGGAAACCCGTCGTCTTTAGAGGCGTCCAAGAATATCTTATCGGAGAGGAATCGGAGAAAGAAGCTCAATGATAGACTTCTCGCTCTCAGAGCTGTGGTCCCTAATATCACCAAAATGGACAAGGCGTCGATAATCAAAGACGCGATTGAGTACATCCAAGAGCTGCGAGCGCAAGAGAAGAGAATTGAAGCAGAGATCTCAGATTTGGAATCAGGCAAAATCAACAACAGAACAACAAATCATCAATCCATCGATGATCGAATCTCGACAAAGAGTAGGAAACCGAATCGGAAGGTAGTCTATGCGCCATTGTCGTTCCCGATCGAAGTTCTCGATTTGAGTGTGAATTACATGGGAGAGAAGACGATGGTGGTGAGTTTGACGTGTGGACGAAGAGGCGATACGATATTGAAAATTTGCCAAGTGATTGAATCGCTGAAGTTGAACATTATTACTGCTAACATCACCGTCGTTGCCAACAGGCTTTTCAACACTCTCTTCCTTGAGGCAGAGAGAGCAGAGGAAGAGGAACTAAAGGGTAAAATAGAAACAGCAATTGCAGCAATTAGTGATCCACAAAGCTCTATGAGCATTTGA 723 44.81 MEDILDDYRYYWETNMFLQTEEIDSWGLDEAFYGSYDSSSPDGNPSSLEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELRAQEKRIEAEISDLESGKINNRTTNHQSIDDRISTKSRKPNRKVVYAPLSFPIEVLDLSVNYMGEKTMVVSLTCGRRGDTILKICQVIESLKLNIITANITVVANRLFNTLFLEAERAEEEELKGKIETAIAAISDPQSSMSI 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 59143119 59151841 - Hsped.08g20860.1 Hepe08g2086 578058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2086 240 SMART finulus 54 103 IPR011598 GO:0046983(InterPro)
Hepe08g2086 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983(InterPro)
Hepe08g2086 240 Pfam Helix-loop-helix DNA-binding domain 54 98 IPR011598 GO:0046983(InterPro)
Hepe08g2086 240 Gene3D - 46 114 IPR036638 GO:0046983(InterPro)
Hepe08g2086 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 111 IPR036638 GO:0046983(InterPro)
Hepe08g2086 240 Coils Coil 87 114 - -
Hepe08g2086 240 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 48 221 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Hepe08g2086 240 ProSiteProfiles ACT domain profile. 166 239 IPR002912 -
Hepe08g2086 240 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 118 - -
Hepe08g2086 240 Coils Coil 210 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2086 Hepe-Chr8:59143119 Hepe10g1639 Hepe-Chr10:53096347 2.33e-19 dispersed
Hepe08g0930 Hepe-Chr8:8561338 Hepe08g2086 Hepe-Chr8:59143119 1.34e-21 transposed
Hepe08g2086 Hepe-Chr8:59143119 Hepe09g0452 Hepe-Chr9:4087830 5.49e-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56257 PF00010 HLH 7.20E-11 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2086 - - - 0.0