Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2161 ATGGATCCTGAAGTAATCAACGGCCAGGATTTCATCTTCCGATCAAAACTTCCCGACATATACATCCCAAACCACCTCCCTCTCCACACCTATTGCTTCGAAAACCTCTCCAAATTCCACGACCGCCCCTGCCTGATCAACGGCGCCACCGGCCAAATCCACACCTACGCCGCCGTCGACCTGGCCGCGCGCCGTGTCGCCGCCGGGCTGAGCAAGATCGGCGTCGGCCAAGGCGACGTGATAATGCTTCTACTGCAGAACAGCCCGGAGTTCGTCTTCGCCTTCCTCGGCGCGTCGTACGGCGGCGCCATAGCCACCACTGCGAACCCTTTTTACAAGCCGCCGGAGATCACGAAGCAGGCGGCGGCGGCGAGGCCGAAGGTCATAATTACGCAGGCGGAGTTCGTGGAGAAGGTTTGGGGATTTGCGGTGGAACATGGGGTGAAGATTTTGTGTACGGATTCTTCGCCGCCGGTGGGTTGCTTGAGATTCTCGGAGCTTTTGGAGGCCGATGAAAAGGAAATTCCGGCGGTGAAGATTAATTGTAATGATGTTGTTGCTCTTCCGTTTTCGTCTGGAACTACTGGAATTCCTAAAGGGGTTATGCTTACGCATAAATCTCTTGTTACTAGCGTCGCTCAGCAGGTAGATGGAGAGAATCCAAATGTAAACTTCAACAGCAACGATGTGCTCATATGTGTTCTTCCATTATTCCACATCTACTCTCTCAACTCCGTTCTTCTCTGCGGATTACGCGTCGGTGCTGCGATTCTCATCCTCCAAAAATACGACATGTCGTCTTTGCTCCGCCTCATTGAGACCCACAAGGCCACAATAGCCCCCTTTGTCCCTCCCATCGTCCTGGACTTCGCCAAGAACCCCGACATCCACCGTTACGACTTGTCGTCCATTAAAATCGTCATGTCGGGCGCCGCCCCCATGGGCAAAGACCTCGAGGACACCGTCAAGGCAAGGCTCCCCAACGCCAAGCTTGGACAGGGGTATGGAATGACAGAGGCAGGGCCAGTGCTATCGATGTGTTTGGCATTTGCAAAGGAACCTTTCGAGGTGAAATCAGGTGCGTGCGGGACTGTAGTAAGAAATGCTGAGATGAAGATCATACATCCAGAAACTGGTGCCTCTTTGCCACGTAATCACCCTGGCGAAATCTGCATACGTGGCTCCCAGATCATGAAAGGTTATCTTAACAACAAAGAAGCAACAATAAAGACCATAGACAAAGATGGGTGGCTTCACACAGGAGACTTAGGGTTCATCGACGACGATGACGAGATCTTCATCGTCGATCGACTGAAGGAACTGATCAAATACAAAGGATACCAAGTCGCCCCAGCAGAGCTTGAAGCTCTCTTGACTTCAAACCCTAACATTTTTTCTGCTGCTGTCATACCTATGGAAGATGAAGCAGCAGGAGAGATCCCTGTTGCATTTGTTGTTAGATCTGAAGGTTCCAAGATTAGTGAGGATGACATCAAAAACTATATTTCAGATCAGGTGATATTTTACAAAAGAATCAGAAAGGTTATCTTTGTGGACTCAATTCCAATGGCTCCTTCAGGCAAGATATTGAGGAAAGTTTTAAAAGCTCAGCTACAGGCTGGTGCCTTTTAA 1632 50.25 MDPEVINGQDFIFRSKLPDIYIPNHLPLHTYCFENLSKFHDRPCLINGATGQIHTYAAVDLAARRVAAGLSKIGVGQGDVIMLLLQNSPEFVFAFLGASYGGAIATTANPFYKPPEITKQAAAARPKVIITQAEFVEKVWGFAVEHGVKILCTDSSPPVGCLRFSELLEADEKEIPAVKINCNDVVALPFSSGTTGIPKGVMLTHKSLVTSVAQQVDGENPNVNFNSNDVLICVLPLFHIYSLNSVLLCGLRVGAAILILQKYDMSSLLRLIETHKATIAPFVPPIVLDFAKNPDIHRYDLSSIKIVMSGAAPMGKDLEDTVKARLPNAKLGQGYGMTEAGPVLSMCLAFAKEPFEVKSGACGTVVRNAEMKIIHPETGASLPRNHPGEICIRGSQIMKGYLNNKEATIKTIDKDGWLHTGDLGFIDDDDEIFIVDRLKELIKYKGYQVAPAELEALLTSNPNIFSAAVIPMEDEAAGEIPVAFVVRSEGSKISEDDIKNYISDQVIFYKRIRKVIFVDSIPMAPSGKILRKVLKAQLQAGAF 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 60864587 60873467 - Hsped.08g21610.1 Hepe08g2161 578133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2161 543 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Hepe08g2161 543 Pfam AMP-binding enzyme 34 402 IPR000873 -
Hepe08g2161 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 535 - GO:0016405(PANTHER)
Hepe08g2161 543 Gene3D - 4 438 IPR042099 -
Hepe08g2161 543 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Hepe08g2161 543 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 439 - -
Hepe08g2161 543 CDD 4CL 22 534 - -
Hepe08g2161 543 Gene3D - 439 541 IPR045851 -
Hepe08g2161 543 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Hepe08g2161 543 SUPERFAMILY Acetyl-CoA synthetase-like 12 540 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1279 Hepe-Chr2:15978600 Hepe08g2161 Hepe-Chr8:60864587 1.30e-231 dispersed
Hepe03g1690 Hepe-Chr3:73737309 Hepe08g2161 Hepe-Chr8:60864587 3.28e-253 dispersed
Hepe04g2052 Hepe-Chr4:75378941 Hepe08g2161 Hepe-Chr8:60864587 4.16e-28 dispersed
Hepe08g1122 Hepe-Chr8:11201392 Hepe08g2161 Hepe-Chr8:60864587 1.70e-229 dispersed
Hepe08g2161 Hepe-Chr8:60864587 Hepe10g1506 Hepe-Chr10:51833254 1.65e-129 dispersed
Hepe08g2161 Hepe-Chr8:60864587 Hepe09g0491 Hepe-Chr9:4565972 3.11e-261 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2161 K01904 - csv:101210868 934.48