Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2173 ATGGGTTTTATTGAAGAATATTTGCCTGCAATGGCTATGTTTGGGCTTCAAGTGACCTACGCCGTAATGGCTCTCATCTCTCGAGCTGCCCTCTTGAAGGGTATGAGCCCTAGAGTCTTCGTTGTTTATAGGCAGGCTATTGCTACTCTCTTTATTGCACCCATTGCTTATTTCTCCAGGTCGAAATCCAGGAGGGTGTCTTTGGACTTGAAGAGCTTTTCTTTGATCTTCCTTGCTGCTTTTGTCGGTGCAACGATGAACCAAAATGTTTACTTTGAGGGAGTTTTCTTAGCTAGCTCGTCAATGGCGACTGCGATGACGAATTTGATTCCAGCGGTGACGTTTGTAATAGCGGCAATTGTCGGAATGGAGAATGTGAAGTTGAGAAGCTTGAGGAGCATTGCAAAGATTGGAGGGACTGTGGTTTGTGTGAGTGGGGCCATGTGTATGGCTCTTCTAAGGGGTCCAAAGCTTCTTAATGACACACAAGGTTTAGGGGTGAAATCTGCAATATTTGGTGTGGAAAGTGAAAGTCACAATGCTTGGTTATTGGGTTGCTTGTGTCTCTTTGGCAGCTGTTGTTGCTGGTCAGTTTGGTTGATTTTGCAGGTACCGGCGTCAAAATGCTATCCCGACAACTTGTCTTTATCAGCATGGATGTGTTTGTTTGCCACAATTCAATCCCTCATTGTTACTCTATTGGTAGAGCCAATGAATCTAGAAACATGGAAAATACATTCAAATATTGAAGTTATTTGTTACCTCTTCTCAGGAATTGTTGGGTCAGGCATTGCCTTCTTTGTTCAAGCATGGTGTGTTTCACAAAGGGGCCCTGTCTACTCTGCAATGTTCAATCCTCTTTGCACCATTCTTACAACTATTTTAGCAGCTATACTTCTTCATGAGGAGATTTTTACTGGAAGCTTGTTGGGTGGCGTGGCTGTAATTATTGGATTGTACATTGTTCTTTGGGGAAAAGCAAAGGATTATGTGAATGAACAAAGTACAAGTGTTGAAAAACAAGAAGAAGATTGTGAATCAGCGGAGACAAGTAGCTGTAAAAGTGATTTTGAGGAACCTCTTTTGTCCAAAGCATGCATACATCATATTGACAACTAG 1119 42.27 MGFIEEYLPAMAMFGLQVTYAVMALISRAALLKGMSPRVFVVYRQAIATLFIAPIAYFSRSKSRRVSLDLKSFSLIFLAAFVGATMNQNVYFEGVFLASSSMATAMTNLIPAVTFVIAAIVGMENVKLRSLRSIAKIGGTVVCVSGAMCMALLRGPKLLNDTQGLGVKSAIFGVESESHNAWLLGCLCLFGSCCCWSVWLILQVPASKCYPDNLSLSAWMCLFATIQSLIVTLLVEPMNLETWKIHSNIEVICYLFSGIVGSGIAFFVQAWCVSQRGPVYSAMFNPLCTILTTILAAILLHEEIFTGSLLGGVAVIIGLYIVLWGKAKDYVNEQSTSVEKQEEDCESAETSSCKSDFEEPLLSKACIHHIDN 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 61177736 61181248 - Hsped.08g21730.1 Hepe08g2173 578145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2173 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 219 327 - -
Hepe08g2173 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 151 - -
Hepe08g2173 372 PANTHER WAT1-RELATED PROTEIN 11 340 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Hepe08g2173 372 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020(InterPro)
Hepe08g2173 372 Pfam EamA-like transporter family 12 143 IPR000620 GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2173 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2171 Hepe-Chr8:61122661 Hepe08g2173 Hepe-Chr8:61177736 5.57e-201 dispersed
Hepe08g2173 Hepe-Chr8:61177736 Hepe09g0531 Hepe-Chr9:5017956 4.00e-119 dispersed
Hepe08g2172 Hepe-Chr8:61133765 Hepe08g2173 Hepe-Chr8:61177736 1.42e-234 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g750 . . . . . . . . . Cmo11g00429 . Cma12g00827 . Car12g00739 Sed08g0542 Cpe04g01274 . Bhi02g00827 Tan09g1621 Cmetu02g1685 . Hepe09g0531 . . Cla11g01236 Cam11g1297 Cec11g1317 Cco11g1312 Clacu11g1455 Cmu11g1277 Cre11g1698 . Cone16ag0385 . . . Csa02g00579 . Cme02g01012 . . . . . . . . Sed11g0509 . Cmo12g00832 . Cma11g00430 . . . Cpe07g00686 Bhi06g01320 Tan08g0778 Cmetu05g0105 . Hepe08g2173 . . Cla06g01441 Cam06g1595 Cec06g1656 Cco06g1649 Clacu06g1558 Cmu06g1512 Cre06g2320 Lsi11g00715 Csa01g01932 Chy02g02167 Cme05g01459
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe07g0870 . 1 769 Nodulin-like Gene Family AT4G19180 59.0 2.8e-248 855.1
Hepe01g1585 . 24 284 Nodulin-like Gene Family AT3G45870 69.7 1.3e-97 353.2
Hepe02g3120 . 38 395 Nodulin-like Gene Family AT3G28050 61.7 2.1e-119 426.0
Hepe06g1125 . 2 278 Nodulin-like Gene Family AT5G47470 63.3 6.1e-90 328.2
Hepe02g3120 . 38 357 Nodulin-like Gene Family AT5G40240 54.0 2.5e-93 339.3
Hepe10g0597 . 17 283 Nodulin-like Gene Family AT3G53210 58.1 1.8e-85 312.8
Hepe01g1647 . 20 278 Nodulin-like Gene Family AT3G53210 60.6 5.0e-83 304.7
Hepe04g0877 . 99 332 Nodulin-like Gene Family AT2G37450 64.1 3.2e-82 302.0
Hepe01g0808 . 98 333 Nodulin-like Gene Family AT2G37450 52.5 4.7e-65 245.0
Hepe02g2286 . 77 310 Nodulin-like Gene Family AT2G37450 51.1 2.3e-64 242.7
Hepe01g2277 . 96 329 Nodulin-like Gene Family AT2G37450 53.6 6.8e-64 241.1
Hepe02g3014 . 74 310 Nodulin-like Gene Family AT2G37450 51.3 6.3e-62 234.6
Hepe02g2285 . 83 323 Nodulin-like Gene Family AT2G37450 51.8 2.4e-61 232.6
Hepe04g0877 . 12 332 Nodulin-like Gene Family AT2G37460 70.4 3.4e-125 445.3
Hepe01g0808 . 11 333 Nodulin-like Gene Family AT2G37460 55.4 1.6e-98 356.7
Hepe05g0662 . 14 342 Nodulin-like Gene Family AT2G37460 52.7 6.7e-89 324.7
Hepe02g2285 . 20 323 Nodulin-like Gene Family AT2G37460 53.2 3.0e-81 299.3
Hepe02g3014 . 39 306 Nodulin-like Gene Family AT2G37460 56.9 4.1e-78 288.9
Hepe10g0597 . 1 396 Nodulin-like Gene Family AT1G75500 73.0 4.2e-163 571.2
Hepe01g1647 . 14 392 Nodulin-like Gene Family AT1G75500 76.2 7.9e-162 567.0
Hepe09g0368 . 7 344 Nodulin-like Gene Family AT1G75500 60.8 5.9e-117 417.9
Hepe04g0877 . 12 332 Nodulin-like Gene Family AT5G13670 52.2 9.3e-91 330.9
Hepe01g0808 . 8 346 Nodulin-like Gene Family AT2G39510 60.0 3.5e-114 408.7
Hepe04g0877 . 13 366 Nodulin-like Gene Family AT2G39510 55.9 7.2e-112 401.0
Hepe02g3012 . 9 388 Nodulin-like Gene Family AT2G39510 51.0 1.4e-107 386.7
Hepe01g2277 . 10 328 Nodulin-like Gene Family AT2G39510 55.6 1.3e-97 353.6
Hepe05g0662 . 15 349 Nodulin-like Gene Family AT2G39510 52.8 1.4e-94 343.6
Hepe02g3014 . 38 339 Nodulin-like Gene Family AT2G39510 58.4 8.9e-94 340.9
Hepe04g0525 . 16 348 Nodulin-like Gene Family AT2G39510 50.3 8.3e-92 334.3
Hepe02g2285 . 6 357 Nodulin-like Gene Family AT2G39510 50.4 7.3e-88 321.2
Hepe02g3120 . 38 357 Nodulin-like Gene Family AT4G15540 51.6 6.8e-88 321.2
Hepe02g2286 . 1 237 Nodulin-like Gene Family AT4G08290 59.2 3.3e-77 285.4
Hepe01g2277 . 6 256 Nodulin-like Gene Family AT4G08290 55.7 1.2e-74 276.9
Hepe01g2277 . 6 363 Nodulin-like Gene Family AT4G08300 64.8 2.3e-126 449.1
Hepe02g2285 . 6 341 Nodulin-like Gene Family AT4G08300 57.1 1.8e-99 359.8
Hepe04g0877 . 13 332 Nodulin-like Gene Family AT4G08300 50.2 3.1e-86 315.8
Hepe10g0730 . 3 260 Nodulin-like Gene Family AT5G64700 64.0 2.1e-81 299.3
Hepe10g0726 . 39 291 Nodulin-like Gene Family AT5G64700 63.7 1.0e-80 297.0
Hepe08g2173 . 1 364 Nodulin-like Gene Family AT4G30420 54.2 4.2e-107 385.2
Hepe08g2172 . 1 371 Nodulin-like Gene Family AT4G30420 52.0 1.1e-102 370.5
Hepe08g2171 . 1 346 Nodulin-like Gene Family AT4G30420 51.5 3.3e-96 349.0
Hepe01g0949 . 6 381 Nodulin-like Gene Family AT5G07050 65.4 1.8e-140 496.1
Hepe05g0662 . 10 342 Nodulin-like Gene Family AT5G07050 66.8 5.2e-124 441.4
Hepe04g0525 . 4 356 Nodulin-like Gene Family AT5G07050 60.7 2.2e-122 436.0
Hepe01g2277 . 10 329 Nodulin-like Gene Family AT5G07050 53.4 3.9e-95 345.5
Hepe04g0877 . 11 332 Nodulin-like Gene Family AT5G07050 53.0 5.6e-94 341.7
Hepe04g0525 . 13 356 Nodulin-like Gene Family AT3G56620 57.0 4.3e-104 375.2
Hepe01g0949 . 14 344 Nodulin-like Gene Family AT3G56620 55.4 5.1e-97 351.7
Hepe09g1751 . 5 331 Nodulin-like Gene Family AT1G09380 61.0 1.1e-107 387.1
Hepe08g2237 . 1 336 Nodulin-like Gene Family AT1G09380 54.6 7.0e-107 384.4
Hepe04g0525 . 13 351 Nodulin-like Gene Family AT2G40900 60.2 1.5e-107 386.7
Hepe05g0662 . 9 364 Nodulin-like Gene Family AT2G40900 53.6 1.4e-105 380.2
Hepe01g0949 . 14 337 Nodulin-like Gene Family AT2G40900 57.1 1.6e-101 366.7
Hepe09g0368 . 1 358 Nodulin-like Gene Family AT3G18200 67.9 5.1e-129 458.0
Hepe01g1647 . 20 358 Nodulin-like Gene Family AT3G18200 57.5 6.5e-108 387.9
Hepe10g0597 . 17 361 Nodulin-like Gene Family AT3G18200 55.7 5.1e-105 378.3
Hepe01g2277 . 6 355 Nodulin-like Gene Family AT1G44800 64.0 7.6e-122 434.1
Hepe02g2285 . 6 359 Nodulin-like Gene Family AT1G44800 53.5 2.0e-98 356.3
Hepe01g1585 . 108 378 Nodulin-like Gene Family AT5G45370 67.3 4.3e-101 364.8
Hepe01g2277 . 1 306 Nodulin-like Gene Family AT1G21890 66.0 6.5e-115 411.0
Hepe02g2285 . 3 298 Nodulin-like Gene Family AT1G21890 56.1 8.3e-94 340.9
Hepe05g0662 . 7 318 Nodulin-like Gene Family AT1G21890 52.4 9.8e-87 317.4
Hepe01g0949 . 11 317 Nodulin-like Gene Family AT1G21890 50.2 5.0e-83 305.1
Hepe04g0877 . 11 313 Nodulin-like Gene Family AT1G21890 51.0 7.3e-82 301.2
Hepe02g1321 . 1 566 Nodulin-like Gene Family AT1G80530 59.6 7.1e-188 654.1
Hepe07g0001 . 1 414 Nodulin-like Gene Family AT4G19450 67.5 1.0e-151 533.5
Hepe07g0850 . 1 414 Nodulin-like Gene Family AT4G19450 67.2 1.4e-151 533.1
Hepe03g0429 . 25 419 Nodulin-like Gene Family AT4G19450 56.2 4.5e-123 438.3
Hepe09g0146 . 10 540 Nodulin-like Gene Family AT1G74780 59.6 1.5e-182 636.3
Hepe09g0147 . 5 527 Nodulin-like Gene Family AT1G74780 56.8 2.9e-167 585.5
Hepe09g0148 . 6 437 Nodulin-like Gene Family AT1G74780 56.4 4.2e-137 485.3
Hepe08g0281 . 10 545 Nodulin-like Gene Family AT4G34950 69.9 1.0e-218 756.5
Hepe02g0432 . 10 267 Nodulin-like Gene Family AT4G34950 70.8 3.3e-100 362.8
Hepe02g0433 . 1 143 Nodulin-like Gene Family AT4G34950 80.4 1.9e-63 240.7
Hepe02g3404 . 6 592 Nodulin-like Gene Family AT5G14120 69.4 1.9e-236 815.5
Hepe08g0281 . 1 391 Nodulin-like Gene Family AT2G16660 69.2 6.3e-151 530.8
Hepe02g0432 . 10 266 Nodulin-like Gene Family AT2G16660 73.4 3.4e-104 375.6
Hepe01g1053 . 13 573 Nodulin-like Gene Family AT2G39210 70.8 1.4e-229 792.7
Hepe02g2925 . 23 598 Nodulin-like Gene Family AT2G39210 62.3 2.0e-204 709.1
Hepe05g0285 . 1 576 Nodulin-like Gene Family AT2G39210 59.1 1.5e-196 682.9
Hepe10g1059 . 19 573 Nodulin-like Gene Family AT2G39210 58.7 7.1e-186 647.5
Hepe10g1074 . 11 552 Nodulin-like Gene Family AT2G39210 52.6 5.3e-157 551.6
Hepe10g1070 . 11 552 Nodulin-like Gene Family AT2G39210 52.2 2.6e-156 549.3
Hepe10g1075 . 11 552 Nodulin-like Gene Family AT2G39210 52.2 4.5e-156 548.5
Hepe01g0570 . 20 549 Nodulin-like Gene Family AT2G39210 51.5 2.0e-151 533.1
Hepe01g1055 . 6 281 Nodulin-like Gene Family AT2G39210 68.1 1.7e-102 370.5
Hepe10g1076 . 57 295 Nodulin-like Gene Family AT2G39210 60.3 3.8e-78 289.7
Hepe10g1077 . 11 239 Nodulin-like Gene Family AT2G39210 58.1 2.5e-74 276.9
Hepe10g0988 . 21 222 Nodulin-like Gene Family AT2G39210 54.8 3.4e-55 213.4
Hepe07g0001 . 6 505 Nodulin-like Gene Family AT3G01630 52.0 4.4e-129 458.8
Hepe07g0850 . 6 413 Nodulin-like Gene Family AT3G01630 50.5 1.7e-96 350.5
Hepe02g3404 . 6 429 Nodulin-like Gene Family AT3G01930 70.1 1.4e-170 596.3
Hepe09g0146 . 10 543 Nodulin-like Gene Family AT1G18940 55.0 1.1e-169 593.6
Hepe09g0147 . 5 527 Nodulin-like Gene Family AT1G18940 53.7 8.5e-159 557.4
Hepe09g0148 . 1 437 Nodulin-like Gene Family AT1G18940 53.0 2.0e-131 466.5
Hepe09g0146 . 6 541 Nodulin-like Gene Family AT2G34350 56.7 1.9e-163 572.8
Hepe09g0147 . 6 526 Nodulin-like Gene Family AT2G34350 53.9 1.2e-152 537.0
Hepe09g0148 . 7 437 Nodulin-like Gene Family AT2G34350 52.4 2.0e-123 439.9
Hepe10g1059 . 14 563 Nodulin-like Gene Family AT2G28120 70.4 7.7e-222 766.9
Hepe01g1053 . 9 581 Nodulin-like Gene Family AT2G28120 60.5 2.5e-196 682.2
Hepe05g0285 . 12 557 Nodulin-like Gene Family AT2G28120 59.4 3.4e-185 645.2
Hepe02g2925 . 21 578 Nodulin-like Gene Family AT2G28120 59.7 2.3e-181 632.5
Hepe10g1074 . 8 556 Nodulin-like Gene Family AT2G28120 58.2 3.0e-181 632.1
Hepe10g1070 . 8 569 Nodulin-like Gene Family AT2G28120 57.4 5.1e-181 631.3
Hepe10g1075 . 8 556 Nodulin-like Gene Family AT2G28120 57.5 3.6e-179 625.2
Hepe01g0570 . 9 553 Nodulin-like Gene Family AT2G28120 56.6 2.9e-176 615.5
Hepe09g1222 . 8 554 Nodulin-like Gene Family AT2G28120 54.8 2.9e-168 589.0
Hepe09g1504 . 8 565 Nodulin-like Gene Family AT2G28120 54.3 3.8e-168 588.6
Hepe01g0227 . 5 569 Nodulin-like Gene Family AT2G28120 52.4 1.9e-159 559.7
Hepe10g0746 . 1 569 Nodulin-like Gene Family AT2G28120 50.4 2.7e-158 555.8
Hepe04g0374 . 1 563 Nodulin-like Gene Family AT2G28120 50.2 7.6e-153 537.7
Hepe10g1067 . 2 363 Nodulin-like Gene Family AT2G28120 53.3 3.2e-98 356.3
Hepe10g1076 . 2 312 Nodulin-like Gene Family AT2G28120 55.6 1.9e-90 330.5
Hepe01g1055 . 20 273 Nodulin-like Gene Family AT2G28120 61.8 1.9e-87 320.5
Hepe10g1077 . 8 236 Nodulin-like Gene Family AT2G28120 62.4 4.6e-81 299.3
Hepe10g0988 . 21 226 Nodulin-like Gene Family AT2G28120 60.7 2.3e-64 243.8
Hepe07g0001 . 1 505 Nodulin-like Gene Family AT1G31470 58.7 2.0e-153 539.7
Hepe07g0850 . 1 412 Nodulin-like Gene Family AT1G31470 55.8 5.2e-117 418.7
Hepe03g0429 . 28 420 Nodulin-like Gene Family AT1G31470 52.3 4.9e-107 385.6
Hepe10g1971 . 27 208 Nodulin-like Gene Family AT1G76800 79.7 4.5e-73 271.2
Hepe02g2791 . 17 217 Nodulin-like Gene Family AT1G76800 68.2 3.5e-65 245.0
Hepe02g0824 . 11 147 Nodulin-like Gene Family AT1G76800 62.8 4.1e-42 168.3
Hepe10g1971 . 32 208 Nodulin-like Gene Family AT3G25190 64.2 1.0e-57 220.3
Hepe02g2791 . 23 217 Nodulin-like Gene Family AT3G25190 59.0 2.6e-53 205.7
Hepe02g0824 . 16 147 Nodulin-like Gene Family AT3G25190 67.9 9.3e-43 170.6
Hepe10g1971 . 27 208 Nodulin-like Gene Family AT1G21140 76.0 6.7e-72 267.3
Hepe02g2791 . 4 217 Nodulin-like Gene Family AT1G21140 66.8 2.2e-67 252.3
Hepe02g0824 . 3 147 Nodulin-like Gene Family AT1G21140 61.4 3.8e-43 171.8
Hepe10g1971 . 27 205 Nodulin-like Gene Family AT3G43630 77.8 3.9e-72 268.1
Hepe02g2791 . 20 214 Nodulin-like Gene Family AT3G43630 71.2 2.2e-67 252.3
Hepe02g0824 . 15 147 Nodulin-like Gene Family AT3G43630 66.9 3.6e-41 165.2
Hepe10g1971 . 27 208 Nodulin-like Gene Family AT3G43660 76.0 6.6e-72 267.3
Hepe02g2791 . 1 217 Nodulin-like Gene Family AT3G43660 65.4 3.8e-67 251.5
Hepe02g0824 . 17 147 Nodulin-like Gene Family AT3G43660 64.9 6.0e-41 164.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002385 0 3 0 0 0 1 3 1 1 0 1 1 3 1 1 3 1 2 3 1 1 4 3 5 4 1 2 7 5 1 59