Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2208 ATGCTTGATTGTGGTTACAAGTCACATCTGATGGGTGGTCAGCGAGAAAAATTTGTGAGGTTGGATGACTTGGACTCTAGATTGTCATCGCCTTCTGATAGTGGAATGAGAAGATGTGGTTTTAACATAGATGGATTTAACCGTGCAAATGATAAGCCGTCTGGATCCTTTAAGAGAGGAATGAGAAAAGGGTCCGAAGGACTTAAATCAATCGGCCGAACACTCAAGTTTGGGGTTTCTCGAGCTGTATTTCCAGAGGATCTGAAAGAGTCAAAGAAGAAGATCTTCGATCCTCAAGACAAATTGCTCCTATTTTTAAATAAACTTTTTGTCATATCATGTATTTTGGCAATATCTGTGGACCCACTATTCTTGTATGTTCCTGTCATTAACCAAGCCTCGAACTGTCTTGGCATTGATAGAAAGCTGGCAATTACAGTGACAACATTGCGGACAATTATTGATGTTTTCTATCTTATTCATATGGCTCTCCAATTCCGGACAGCTTATATTGCTCCATCATCTCGGGTGTTTGGGAGAGGTGAACTTGTGATTGATCCTGCACAAATAGCAAAGCGATACTTGAGGCGGTATTTCATCATTGATTTGGTGTCTGTGCTGCCCCTTCCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTATATGTGACAAAACAGGCCCTTCTTTTAATTGTATTCCTTCAATATATCCCAAGATTTCTTAGAGCGTTACCGTTGGCTTCAGAATTGAAAAGGACAACAGGCGTATTTGCAGAAACTGCATGGGCAGGTGCTGCATATTATTTGCTATTATATATGCTTGCAAGTCATATTGTTGGAGCATTATGGTACTTATTAGCTGTGGAACGCAATGATACATGTTGGCAGCGGTTTTGTGAAGGGTTTTGCAGGAAAGATTTCTTATATTGTGGTAACCAAGACATGGAAGGTTATGCAGCTTGGAACCAGACAGTCCTCCAGACAAGTTGCAAACCTGCTGATGATAATGATCAATTTGATTTTGGAATCTTTCAACAGGCTTTGTCCTCTGGTATTGCCGCATCCAAGAATTTTATAGGCAAATATTGTTACTGTCTATGGTGGGGTCTACAAAACTTAAGTACGCTCGGGCAGGGGCTTCAAACAAGCACATATCCGGGTGAAGTGATCTTTTCTATAGCATTGGCTGTACTTGGTCTCATCCTCTTTGCACTTCTTATTGGCAACATGCAGACTTATCTTCAATCTCTAACTATAAGGCTCGAGGAAATGAGGGTTAAAAGGCGTGATTCGGAGCAGTGGATGCATCACCGCTTGCTGCCGCAGGAACTGCGGGAGAGAGTCAGGCGTTATGATCAGTACAAGTGGTTGGAGACCCGCGGGGTGGATGAACAGAGTTTGGTTCAAACTCTACCTAAAGATCTTAGGAGAGATATTAAGCGGCATCTTTGTCTGGCTTTAGTAAGAAGGGTTCCTCTGTTTGAAAACATGGACGAGAGGCTGCTTGATGCTATCTGTGAGCGGCTGAAACCATGTTTGTTTACGGAGTACACTTACATAGTCCGTGAAGGTGATCCAGTTGATGAGATGCTTTTCATTATACGTGGTCGGCTCGAGAGTGTGACTACGGATGGTGGGCGGAGTGGATTTTTCAACCGTACCTTTCTGAAAGAAGGTGATTTTTGTGGTGAAGAGCTTTTGACCTGGGCTCTGGATCCAAAATCTGGTTCGAATCTTCCAACTTCTACAAGGACAGTAAAGGCTATTACAGAGGTTGAGGCTTTTGCCCTTGTTGCTGAAGAGTTGAAATTTGTGGCCAGTCAGTTCAGGCGCCTTCACAGTAGACAGGTGCAACATACCTTCCGATTCTACTCACAGCAATGGAGGGCCTGGGCTGCTTGCTTCATCCAAGCGGCATGGCGTCGGTATTCCAAGAGAAAGTCTATGGAACTTCGTCAAAAGGAAGAAGTTGCAGCAGAAGAATCCGAGGGATCTCAAACTACAACAAGCGGAGGCTCTTATAGTATTCGTGCAACTTTCTTAGCTTCCAAATTTGCTGCCAATGCTCTCCGGGGTGTTCAGCGATATCGGAACGCAAAGAGCGCTCAGGAATTGATAAAATTGCAGAAGCCTCCAGAGCCAGATTTTAGCGCGGATGATGCCGATTGA 2184 43.73 MLDCGYKSHLMGGQREKFVRLDDLDSRLSSPSDSGMRRCGFNIDGFNRANDKPSGSFKRGMRKGSEGLKSIGRTLKFGVSRAVFPEDLKESKKKIFDPQDKLLLFLNKLFVISCILAISVDPLFLYVPVINQASNCLGIDRKLAITVTTLRTIIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDLVSVLPLPQIVVWRFLQRSKGSDVYVTKQALLLIVFLQYIPRFLRALPLASELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDTCWQRFCEGFCRKDFLYCGNQDMEGYAAWNQTVLQTSCKPADDNDQFDFGIFQQALSSGIAASKNFIGKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKEGDFCGEELLTWALDPKSGSNLPTSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRAWAACFIQAAWRRYSKRKSMELRQKEEVAAEESEGSQTTTSGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 61746422 61760882 + Hsped.08g22080.1 Hepe08g2208 578180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2208 727 SUPERFAMILY cAMP-binding domain-like 427 618 IPR018490 -
Hepe08g2208 727 Gene3D - 108 423 - -
Hepe08g2208 727 ProSiteProfiles IQ motif profile. 634 663 - -
Hepe08g2208 727 SMART cnmp_10 498 629 IPR000595 -
Hepe08g2208 727 Gene3D Helix hairpin bin 426 489 - -
Hepe08g2208 727 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 80 715 - -
Hepe08g2208 727 SUPERFAMILY Voltage-gated potassium channels 98 420 - -
Hepe08g2208 727 Gene3D Jelly Rolls 496 616 IPR014710 -
Hepe08g2208 727 Pfam Cyclic nucleotide-binding domain 523 608 IPR000595 -
Hepe08g2208 727 FunFam Cyclic nucleotide-gated ion channel 1 496 614 - -
Hepe08g2208 727 ProSiteProfiles cAMP/cGMP binding motif profile. 498 582 IPR000595 -
Hepe08g2208 727 Pfam Ion transport protein 108 424 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g2208 727 FunFam Cyclic nucleotide-gated ion channel 1 425 489 - -
Hepe08g2208 727 PRINTS EAG/ELK/ERG potassium channel family signature 162 171 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Hepe08g2208 727 PRINTS EAG/ELK/ERG potassium channel family signature 151 161 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Hepe08g2208 727 PRINTS EAG/ELK/ERG potassium channel family signature 393 404 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Hepe08g2208 727 PRINTS EAG/ELK/ERG potassium channel family signature 461 468 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Hepe08g2208 727 PRINTS EAG/ELK/ERG potassium channel family signature 279 289 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Hepe08g2208 727 PRINTS EAG/ELK/ERG potassium channel family signature 367 384 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Hepe08g2208 727 PRINTS EAG/ELK/ERG potassium channel family signature 411 420 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Hepe08g2208 727 CDD CAP_ED 498 629 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1912 Hepe-Chr2:31819252 Hepe08g2208 Hepe-Chr8:61746422 0.0 dispersed
Hepe05g2017 Hepe-Chr5:70741706 Hepe08g2208 Hepe-Chr8:61746422 2.52e-178 dispersed
Hepe07g0082 Hepe-Chr7:769969 Hepe08g2208 Hepe-Chr8:61746422 1.72e-137 dispersed
Hepe07g0083 Hepe-Chr7:779978 Hepe08g2208 Hepe-Chr8:61746422 9.21e-179 dispersed
Hepe07g1099 Hepe-Chr7:18441723 Hepe08g2208 Hepe-Chr8:61746422 2.35e-78 dispersed
Hepe08g2208 Hepe-Chr8:61746422 Hepe09g0522 Hepe-Chr9:4885919 1.27e-245 dispersed
Hepe08g2208 Hepe-Chr8:61746422 Hepe06g0783 Hepe-Chr6:54472140 1.59e-262 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2208 K05391 - csv:101219180 1338.94