Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2254 ATGTCTTGGCTCGGGAGACTTCTCATCCTTGGGCTTCCGAGCCGTGTCTCCACGACTCGGTGTGCTCGACGAGCCTCTTCATATGTGGCCGTGGAGTGCCTACAAGGACGGTCGACACGTGGACCGTTGATCCTACCCCTAACAATATATGTAACTGGTGAAGCCATTGCAAGCACAAGCTGTGGTGGGATTCATGAAGCTTTAATGGTGGATGATGAAATGCTTCAGCTTGAAGCTGAGGTCACCACTGGCTTAAACATGTCTGATATAATCAAGACTCAAATTGTTAACCATCCCCTCTATCCCAAACTGGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTCTCTTCTTGAAGAAATTGGTCGTGAAAGTCACCCTCCTAGGTCTTGTATTGAGTTGGGAGCTGATCCTCAACTGGACAATTTTATGGAGTCATACTGTGAGGTTCTTCAACAATACAAGAATGAGCTATCCAAGCCATTTGTTGAAGCAACAATGTTCTTGACCAACATTGAATTGGAGCTAAGCAATCTGTGTAAAGGATCGTTTACCACGACGTCCGATTCTCACTCCGCTATGAATGACGAAGTAGCCGGGACACCGGAGGAAGAACCGAGCAGCTACGGGGAGGTGGAGATGCCGGGAAATCACGAGTCATTCTGCACGCGGCAAACAAACCAAGACCTCAAAGAAATGCTGCTGAAGAAATACAGTGGCTATCTCAGCAGTTTGAAAAAGGAATTCTTGAAAAAAAGGAAGAAGGAAAAGTTGCCAAAGGATGCAAGAATGGCTCTACTTGACTGGTGGAACACTCATTACAAATGGCCTTATCCTACAGAAGAGGAAAAATTAAAACTATCTGATATCACTGGTTTGGACCAAAAGCAGATCAATAACTGGTTCATAAACCAGAGAAAACGGCATTGGAAGCCGCCCGAAGATATGCGATTCGCGCTCATGGACGGGGTCGGGGAATGTATCAAAGGATCAAATTTTTATGACAATGGAGAAACTGGAGGCCATGTAATTTGA 1053 45.49 MSWLGRLLILGLPSRVSTTRCARRASSYVAVECLQGRSTRGPLILPLTIYVTGEAIASTSCGGIHEALMVDDEMLQLEAEVTTGLNMSDIIKTQIVNHPLYPKLVSAYIECQKVGAPPQVASLLEEIGRESHPPRSCIELGADPQLDNFMESYCEVLQQYKNELSKPFVEATMFLTNIELELSNLCKGSFTTTSDSHSAMNDEVAGTPEEEPSSYGEVEMPGNHESFCTRQTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALLDWWNTHYKWPYPTEEEKLKLSDITGLDQKQINNWFINQRKRHWKPPEDMRFALMDGVGECIKGSNFYDNGETGGHVI 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 62294805 62297944 + Hsped.08g22540.1 Hepe08g2254 578226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2254 350 Pfam ELK domain 235 256 IPR005539 GO:0003677(InterPro)
Hepe08g2254 350 Pfam KNOX2 domain 140 186 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe08g2254 350 SMART ELK_2 235 256 IPR005539 GO:0003677(InterPro)
Hepe08g2254 350 MobiDBLite consensus disorder prediction 194 219 - -
Hepe08g2254 350 Pfam KNOX1 domain 91 132 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe08g2254 350 Gene3D - 253 325 - -
Hepe08g2254 350 SMART KNOX2_2 136 187 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe08g2254 350 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 94 327 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe08g2254 350 ProSiteProfiles 'Homeobox' domain profile. 255 318 IPR001356 GO:0003677(InterPro)
Hepe08g2254 350 Pfam Homeobox KN domain 275 314 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe08g2254 350 ProSiteProfiles ELK domain profile. 235 255 IPR005539 GO:0003677(InterPro)
Hepe08g2254 350 CDD homeodomain 267 318 IPR001356 GO:0003677(InterPro)
Hepe08g2254 350 SMART KNOX1_2 89 133 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe08g2254 350 ProSitePatterns 'Homeobox' domain signature. 293 316 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe08g2254 350 SMART HOX_1 257 322 IPR001356 GO:0003677(InterPro)
Hepe08g2254 350 SUPERFAMILY Homeodomain-like 257 325 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2254 Hepe-Chr8:62294805 Hepe09g0208 Hepe-Chr9:1730709 5.95e-86 dispersed
Hepe08g2254 Hepe-Chr8:62294805 Hepe10g1622 Hepe-Chr10:52932223 1.64e-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56265 PF03791 KNOX2 4.60E-20 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2254 - - - 0.0