Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2257 ATGGAAGGCCCTCTGCTGCAAAAGGTGTGCGCCTTGTACCACCAAATCTCCAGCCTCACCAGCCTCAAGCCTTCCAAAAATGTCGACACTCTTTTCACCCAACTCGTCCTTACGTGCTCCCCGCCCGCCCCCGGCCTCGACATCGCCTCTTTGCCGCAGCCCCTTCGAGCCATGAGGGCTCATCTCATCCGCCTCTGCGCTACCGCCGAGGCACTGCTTGAACTTCACTTCTCTGCCATTTTGGCCTCCTTTGACAATCCCATTCATAACTTGTCTATCTTCCCTTATTACTCTAATTACTTGAAGCTCTCGCTTCTCGAGTTCGATATTTTAAGAACTCATTGTCGTCGGGTGCCGGATAGTATTGCGTTTGTTGGCTCTGGCCCGCTCCCGCTCTCCTCCATTGTCATGGCGTCGACCCATTTTAAGGGTACTATTTTCCACAACTTTGACATTGACCCGACCGCGAACTCCATGGCGGGTCGATTAGTTTGCTCTGACTCGGACTTGTCGCGACGGATGGTGTTTCACACAACCGACGTAATGGAGGTGACGAAGGGGTTGGGAGAGTATGAGGTGGTGTTTTTAGCAGCGTTGGTGGGGTTGGAGGAGGAAGAGAAGAGGAGGGTTTTGAGGCATTTAGGGAAGCATATGAAGCCTGGGGCTTATTTGATGCTTAGAAGTGCACATGGAGCTAGGGCATTTTTGTACCCTATTATTGATGTTTGTGATGTTGAAGCGTCTGGGTTTGAGATTCTTTCTGTGTTTCACCCGACCGATGAAGTTATTAACTCTGTTGTTATTGCAAGGAAGGTGTTTGATCTCGTCCCCGAGATCGGAGGAAATTCTGTCGAGGATGATGATAAAGATTACGATGTCGATATCGATATCGATACCGATGATGAGAAGCGAGGTATTTTAGATAACACCCCTATTGTGTTGGCTGAGAAGTGCTCTGGATTTAAAGACTTTATTCATCCCATGATTGAAGAGCTTGCCATGGAAGAACAACTTTCTTGA 1020 48.82 MEGPLLQKVCALYHQISSLTSLKPSKNVDTLFTQLVLTCSPPAPGLDIASLPQPLRAMRAHLIRLCATAEALLELHFSAILASFDNPIHNLSIFPYYSNYLKLSLLEFDILRTHCRRVPDSIAFVGSGPLPLSSIVMASTHFKGTIFHNFDIDPTANSMAGRLVCSDSDLSRRMVFHTTDVMEVTKGLGEYEVVFLAALVGLEEEEKRRVLRHLGKHMKPGAYLMLRSAHGARAFLYPIIDVCDVEASGFEILSVFHPTDEVINSVVIARKVFDLVPEIGGNSVEDDDKDYDVDIDIDTDDEKRGILDNTPIVLAEKCSGFKDFIHPMIEELAMEEQLS 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 62313995 62315505 - Hsped.08g22570.1 Hepe08g2257 578229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2257 339 PANTHER NICOTIANAMINE SYNTHASE 3 5 273 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Hepe08g2257 339 Pfam Nicotianamine synthase protein 5 272 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Hepe08g2257 339 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Hepe08g2257 339 Gene3D Vaccinia Virus protein VP39 8 273 IPR029063 -
Hepe08g2257 339 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 271 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2257 Hepe-Chr8:62313995 Hepe09g0493 Hepe-Chr9:4585482 1.69e-85 dispersed
Hepe08g2257 Hepe-Chr8:62313995 Hepe08g2258 Hepe-Chr8:62329087 1.96e-88 tandem
Hepe08g2257 Hepe-Chr8:62313995 Hepe09g1731 Hepe-Chr9:53995278 1.34e-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2257 K05953 - csv:101203651 469.544