Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2257 ATGGAAGGCCCTCTGCTGCAAAAGGTGTGCGCCTTGTACCACCAAATCTCCAGCCTCACCAGCCTCAAGCCTTCCAAAAATGTCGACACTCTTTTCACCCAACTCGTCCTTACGTGCTCCCCGCCCGCCCCCGGCCTCGACATCGCCTCTTTGCCGCAGCCCCTTCGAGCCATGAGGGCTCATCTCATCCGCCTCTGCGCTACCGCCGAGGCACTGCTTGAACTTCACTTCTCTGCCATTTTGGCCTCCTTTGACAATCCCATTCATAACTTGTCTATCTTCCCTTATTACTCTAATTACTTGAAGCTCTCGCTTCTCGAGTTCGATATTTTAAGAACTCATTGTCGTCGGGTGCCGGATAGTATTGCGTTTGTTGGCTCTGGCCCGCTCCCGCTCTCCTCCATTGTCATGGCGTCGACCCATTTTAAGGGTACTATTTTCCACAACTTTGACATTGACCCGACCGCGAACTCCATGGCGGGTCGATTAGTTTGCTCTGACTCGGACTTGTCGCGACGGATGGTGTTTCACACAACCGACGTAATGGAGGTGACGAAGGGGTTGGGAGAGTATGAGGTGGTGTTTTTAGCAGCGTTGGTGGGGTTGGAGGAGGAAGAGAAGAGGAGGGTTTTGAGGCATTTAGGGAAGCATATGAAGCCTGGGGCTTATTTGATGCTTAGAAGTGCACATGGAGCTAGGGCATTTTTGTACCCTATTATTGATGTTTGTGATGTTGAAGCGTCTGGGTTTGAGATTCTTTCTGTGTTTCACCCGACCGATGAAGTTATTAACTCTGTTGTTATTGCAAGGAAGGTGTTTGATCTCGTCCCCGAGATCGGAGGAAATTCTGTCGAGGATGATGATAAAGATTACGATGTCGATATCGATATCGATACCGATGATGAGAAGCGAGGTATTTTAGATAACACCCCTATTGTGTTGGCTGAGAAGTGCTCTGGATTTAAAGACTTTATTCATCCCATGATTGAAGAGCTTGCCATGGAAGAACAACTTTCTTGA 1020 48.82 MEGPLLQKVCALYHQISSLTSLKPSKNVDTLFTQLVLTCSPPAPGLDIASLPQPLRAMRAHLIRLCATAEALLELHFSAILASFDNPIHNLSIFPYYSNYLKLSLLEFDILRTHCRRVPDSIAFVGSGPLPLSSIVMASTHFKGTIFHNFDIDPTANSMAGRLVCSDSDLSRRMVFHTTDVMEVTKGLGEYEVVFLAALVGLEEEEKRRVLRHLGKHMKPGAYLMLRSAHGARAFLYPIIDVCDVEASGFEILSVFHPTDEVINSVVIARKVFDLVPEIGGNSVEDDDKDYDVDIDIDTDDEKRGILDNTPIVLAEKCSGFKDFIHPMIEELAMEEQLS 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 62313995 62315505 - Hsped.08g22570.1 Hepe08g2257 578229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2257 339 PANTHER NICOTIANAMINE SYNTHASE 3 5 273 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Hepe08g2257 339 Pfam Nicotianamine synthase protein 5 272 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Hepe08g2257 339 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Hepe08g2257 339 Gene3D Vaccinia Virus protein VP39 8 273 IPR029063 -
Hepe08g2257 339 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 271 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2257 K05953 - - csv:101203651 469.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2257 Hepe-Chr8:62313995 Hepe09g0493 Hepe-Chr9:4585482 1.69e-85 dispersed
Hepe08g2257 Hepe-Chr8:62313995 Hepe08g2258 Hepe-Chr8:62329087 1.96e-88 tandem
Hepe08g2257 Hepe-Chr8:62313995 Hepe09g1731 Hepe-Chr9:53995278 1.34e-121 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g1731 . 1 272 Nicotianamine Synthase Gene Family AT1G09240 59.5 2.4e-92 335.9
Hepe08g2257 . 5 271 Nicotianamine Synthase Gene Family AT1G09240 60.6 2.1e-91 332.8
Hepe09g0493 . 16 284 Nicotianamine Synthase Gene Family AT1G09240 54.0 3.0e-74 275.8
Hepe08g2258 . 1 237 Nicotianamine Synthase Gene Family AT1G09240 60.9 6.3e-72 268.1
Hepe09g1731 . 3 272 Nicotianamine Synthase Gene Family AT1G56430 61.4 1.5e-97 353.2
Hepe08g2257 . 5 272 Nicotianamine Synthase Gene Family AT1G56430 61.1 1.2e-94 343.6
Hepe09g0493 . 18 281 Nicotianamine Synthase Gene Family AT1G56430 54.5 2.9e-77 285.8
Hepe08g2258 . 3 237 Nicotianamine Synthase Gene Family AT1G56430 60.2 5.7e-73 271.6
Hepe09g1731 . 1 272 Nicotianamine Synthase Gene Family AT5G04950 57.8 2.9e-93 339.0
Hepe08g2257 . 5 272 Nicotianamine Synthase Gene Family AT5G04950 58.7 1.6e-88 323.2
Hepe08g2258 . 1 237 Nicotianamine Synthase Gene Family AT5G04950 57.9 1.1e-71 267.3
Hepe09g0493 . 15 281 Nicotianamine Synthase Gene Family AT5G04950 50.2 1.8e-71 266.5
Hepe09g1731 . 1 272 Nicotianamine Synthase Gene Family AT5G56080 58.8 6.4e-93 337.8
Hepe08g2257 . 5 272 Nicotianamine Synthase Gene Family AT5G56080 59.3 4.6e-91 331.6
Hepe08g2258 . 1 237 Nicotianamine Synthase Gene Family AT5G56080 56.9 1.5e-70 263.5
Hepe09g0493 . 15 281 Nicotianamine Synthase Gene Family AT5G56080 50.2 5.9e-70 261.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125