Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2258 ATGTGTTGCCAAACTCTCCTTTTGGTCCAAAAAATCTCAGAACTTTACCACAAAATCTCCACTCTTGAAAGCCTCAAACCCTCCAAAGATGTCAACTTTCTCTTCTCTCAACTCGTCCTAACCTGCACTCCTCCGCCGTCTCCACGGCCCATCGACGTCTCCAAGCTCTCCTCCGCCGTCCAAACCATGAGATCCCATCTCATCAAGCTCTGCGGCGAGGCCGAGGCCCTTCTCGAGCACCATTACTCCACCATTTTAGCCTCTCACCAAAATCCACTTCACCATCTCTCCATCTTCCCATATTACTCCAACTACCTCAAGCTAACCCACCTTGAATTCTCCATTTTGACCCGCCATGCGCCCCATGCAGCGTCCCCGTCCAAGGTGGCGTTTGTCGGCTCGGGGGCGCTCCCGTTCTCGTCCATCATCATGGCCATGAAGTACCTCCCGACAACCGAGTTCCACAACTTCGACGTCGACCCGTCCGCCAATGCCAAGGCCGCGACGCTCGTGGCTGGCGACGCGGACTTGGCCAGGCGGATGGTGTTCCACACGACCGACATCATGGATGCCACCTCGGACGATTTGAGAAAGTTCGAGGTTGTGTTTTTGGCGGCATTGGTGGGGATGGAGAGGGAGGAGAAGGTGAAGGTGATCGAGCATTTGGGAAAGAACATGACCGGCGGCGCGTTGTTGATGCTGAGGAGCGCGGTTTAA 717 55.23 MCCQTLLLVQKISELYHKISTLESLKPSKDVNFLFSQLVLTCTPPPSPRPIDVSKLSSAVQTMRSHLIKLCGEAEALLEHHYSTILASHQNPLHHLSIFPYYSNYLKLTHLEFSILTRHAPHAASPSKVAFVGSGALPFSSIIMAMKYLPTTEFHNFDVDPSANAKAATLVAGDADLARRMVFHTTDIMDATSDDLRKFEVVFLAALVGMEREEKVKVIEHLGKNMTGGALLMLRSAV 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 62329087 62330726 - Hsped.08g22580.1 Hepe08g2258 578230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2258 238 Pfam Nicotianamine synthase protein 7 237 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Hepe08g2258 238 Gene3D Vaccinia Virus protein VP39 2 238 IPR029063 -
Hepe08g2258 238 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 238 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Hepe08g2258 238 PANTHER NICOTIANAMINE SYNTHASE 3 6 237 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2258 Hepe-Chr8:62329087 Hepe09g1731 Hepe-Chr9:53995278 9.11e-85 dispersed
Hepe08g2257 Hepe-Chr8:62313995 Hepe08g2258 Hepe-Chr8:62329087 1.96e-88 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2258 K05953 - csv:101219339 382.104