Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2273 ATGGCTAATACCAGCAATACTGCAGCTGGAGTTGATAACACCTTTAGAAGGAAATTTGATCGAGAGGAGTATTTGGAACGAGCTCGTGAGCGTGAAAACAAGGAGGCTGAGAAGGTTAAGTCGAAATTGAAAGGTCCACCAGTGCAAAGAAAACCATTGAAACATAGAGATTACGAGGTAGACCTCGAGTCCCGATTGGGAAAAACCCAGGTTGTCACTCCAGTTGCACCTCTAAGCCAGCAGGCTGGATACTACTGCCCCGTTTGTGAATGTGTGGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAGAAACATCAGAGAGCGTTGGGTATGTCCATGCGGGTAGAACGGGCATCTCTTGAACAGGTGCAGGAGCGGTTTGAAAGTCTTAAAAAGAGAAAAACGCCTGGAACTTTCACAGAGCAAGACCTTGAAGAGCGTATAATAAAGCAGCAACAAGAAGAAGAACAACGGAAGCGCGAGCGTCGAGAAAGGAAGAAAGAAAAGAAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCCGACGTTGCGGCAATGATGGGATTTGGAGGCTTCCGTTCCTCGAACAAGAAGTGA 612 46.24 MANTSNTAAGVDNTFRRKFDREEYLERARERENKEAEKVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCPVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFESLKKRKTPGTFTEQDLEERIIKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGFGGFRSSNKK 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 62459904 62463422 - Hsped.08g22730.1 Hepe08g2273 578245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2273 203 Coils Coil 144 181 - -
Hepe08g2273 203 Coils Coil 22 42 - -
Hepe08g2273 203 MobiDBLite consensus disorder prediction 29 50 - -
Hepe08g2273 203 MobiDBLite consensus disorder prediction 131 203 - -
Hepe08g2273 203 SMART ZnF_U1_5 81 115 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe08g2273 203 MobiDBLite consensus disorder prediction 131 183 - -
Hepe08g2273 203 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 8 202 IPR040107 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0005681(InterPro)|GO:0046540(PANTHER)
Hepe08g2273 203 Pfam Zinc-finger of C2H2 type 84 108 IPR013087 -
Hepe08g2273 203 SUPERFAMILY beta-beta-alpha zinc fingers 79 125 IPR036236 -
Hepe08g2273 203 FunFam zinc finger matrin-type protein 2-like 78 116 - -
Hepe08g2273 203 Coils Coil 116 136 - -
Hepe08g2273 203 Gene3D Classic Zinc Finger 78 116 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56268 PF12171 zf-C2H2_jaz 3.50E-07 CL0361 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2273 K12848 - csv:101206387 305.064