Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe08g2281 | ATGGCGTCGAGGAATCGGACTTTGATTTTTAAGAAATATAGGGACGCGTTGAGGAGTGTGAGGGTTCCTACCAGCTCTTCGCCTACTTATGCATCGCCATCGACTAGCTCTGGCGCTGGTGGCCCGGTGATTGAATTGGTTAGCTCGTCGTTGTTGCATCCGAATCGGTCGTACGCTCCCTTAAGTACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTTACCGTGGGTCTACCTCCAGCTTGGGTGGATGTATCAGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTGAAGATGGTGGAGTTAGCTAAAGCTCATGCAAAAGCTCTAATGCCTTCATTTGGAGATGGTAAAGAAGATCAACGATTAATTGAATCTCTCACGCAAGACATAACTAATTTAATCAAGAAATCAGAGAAGGGACTCAAGAGACTCTCTGTAGCTGGACCTTCAGAAGATTCCAATATCAGAAAAAATGTTCAGAGATCTCTTGCCACTGACCTTCAGAACCTTTCCGTGGAGCTTCGCAAGAAACAATCAGCTTATTTAAAGCGCCTACAGCAGCAAAAAGAGGAAGTTCAAGATGGGATTGACATAGAGATGAATCTAAACGGAAATAGATCGAGAATGGAGGACGATGATTTAGAACACATGGTATTTAACGAGCATCAGATGGCTAAGTTGCGAAAGAGTGAAGCATTCACAGCCGAAAGAGAGAGAGAGATCCAACAAGTTGTAGAATCCGTGAATGAGCTTGCTCAGATCATGAAGGATCTATCAGTACTTGTCATAGACCAGGGCACCATTGTTGATAGAATAGATCACAATATTCAAAATGTTGCGACAACGGTTGAGGAGGGCCTTAAGCAACTGCAAAAGGCGGAGAGAACACAAAAACAAGGTGGGATGGTAATGTGCGCGTCCGTGCTCATTATCATGTGTTGCGTCATGTTGGTTCTCTTGATCCTTAAAACCATACTATTTTGA | 990 | 44.24 | MASRNRTLIFKKYRDALRSVRVPTSSSPTYASPSTSSGAGGPVIELVSSSLLHPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARVKMVELAKAHAKALMPSFGDGKEDQRLIESLTQDITNLIKKSEKGLKRLSVAGPSEDSNIRKNVQRSLATDLQNLSVELRKKQSAYLKRLQQQKEEVQDGIDIEMNLNGNRSRMEDDDLEHMVFNEHQMAKLRKSEAFTAEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDHNIQNVATTVEEGLKQLQKAERTQKQGGMVMCASVLIIMCCVMLVLLILKTILF | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 62520491 | 62524832 | - | Hsped.08g22810.1 | Hepe08g2281 | 578253 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe08g2281 | 329 | SMART | SynN_4 | 73 | 188 | IPR006011 | GO:0016020(InterPro) | |
Hepe08g2281 | 329 | ProSitePatterns | Syntaxin / epimorphin family signature. | 239 | 278 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Hepe08g2281 | 329 | FunFam | Syntaxin-43 | 79 | 287 | - | - | |
Hepe08g2281 | 329 | Gene3D | - | 79 | 287 | - | - | |
Hepe08g2281 | 329 | CDD | SNARE_syntaxin16 | 237 | 294 | - | - | |
Hepe08g2281 | 329 | MobiDBLite | consensus disorder prediction | 21 | 41 | - | - | |
Hepe08g2281 | 329 | PANTHER | SYNTAXIN | 91 | 316 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Hepe08g2281 | 329 | Pfam | SNARE domain | 269 | 321 | IPR000727 | - | |
Hepe08g2281 | 329 | SUPERFAMILY | t-snare proteins | 78 | 288 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Hepe08g2281 | 329 | Coils | Coil | 184 | 204 | - | - | |
Hepe08g2281 | 329 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 233 | 295 | IPR000727 | - | |
Hepe08g2281 | 329 | SMART | tSNARE_6 | 228 | 295 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe03g1868 | Hepe-Chr3:75673683 | Hepe08g2281 | Hepe-Chr8:62520491 | 2.00e-126 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe08g2281 | K08489 | - | csv:101207998 | 578.941 |