Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2281 ATGGCGTCGAGGAATCGGACTTTGATTTTTAAGAAATATAGGGACGCGTTGAGGAGTGTGAGGGTTCCTACCAGCTCTTCGCCTACTTATGCATCGCCATCGACTAGCTCTGGCGCTGGTGGCCCGGTGATTGAATTGGTTAGCTCGTCGTTGTTGCATCCGAATCGGTCGTACGCTCCCTTAAGTACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTTACCGTGGGTCTACCTCCAGCTTGGGTGGATGTATCAGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTGAAGATGGTGGAGTTAGCTAAAGCTCATGCAAAAGCTCTAATGCCTTCATTTGGAGATGGTAAAGAAGATCAACGATTAATTGAATCTCTCACGCAAGACATAACTAATTTAATCAAGAAATCAGAGAAGGGACTCAAGAGACTCTCTGTAGCTGGACCTTCAGAAGATTCCAATATCAGAAAAAATGTTCAGAGATCTCTTGCCACTGACCTTCAGAACCTTTCCGTGGAGCTTCGCAAGAAACAATCAGCTTATTTAAAGCGCCTACAGCAGCAAAAAGAGGAAGTTCAAGATGGGATTGACATAGAGATGAATCTAAACGGAAATAGATCGAGAATGGAGGACGATGATTTAGAACACATGGTATTTAACGAGCATCAGATGGCTAAGTTGCGAAAGAGTGAAGCATTCACAGCCGAAAGAGAGAGAGAGATCCAACAAGTTGTAGAATCCGTGAATGAGCTTGCTCAGATCATGAAGGATCTATCAGTACTTGTCATAGACCAGGGCACCATTGTTGATAGAATAGATCACAATATTCAAAATGTTGCGACAACGGTTGAGGAGGGCCTTAAGCAACTGCAAAAGGCGGAGAGAACACAAAAACAAGGTGGGATGGTAATGTGCGCGTCCGTGCTCATTATCATGTGTTGCGTCATGTTGGTTCTCTTGATCCTTAAAACCATACTATTTTGA 990 44.24 MASRNRTLIFKKYRDALRSVRVPTSSSPTYASPSTSSGAGGPVIELVSSSLLHPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARVKMVELAKAHAKALMPSFGDGKEDQRLIESLTQDITNLIKKSEKGLKRLSVAGPSEDSNIRKNVQRSLATDLQNLSVELRKKQSAYLKRLQQQKEEVQDGIDIEMNLNGNRSRMEDDDLEHMVFNEHQMAKLRKSEAFTAEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDHNIQNVATTVEEGLKQLQKAERTQKQGGMVMCASVLIIMCCVMLVLLILKTILF 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 62520491 62524832 - Hsped.08g22810.1 Hepe08g2281 578253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2281 329 SMART SynN_4 73 188 IPR006011 GO:0016020(InterPro)
Hepe08g2281 329 ProSitePatterns Syntaxin / epimorphin family signature. 239 278 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Hepe08g2281 329 FunFam Syntaxin-43 79 287 - -
Hepe08g2281 329 Gene3D - 79 287 - -
Hepe08g2281 329 CDD SNARE_syntaxin16 237 294 - -
Hepe08g2281 329 MobiDBLite consensus disorder prediction 21 41 - -
Hepe08g2281 329 PANTHER SYNTAXIN 91 316 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Hepe08g2281 329 Pfam SNARE domain 269 321 IPR000727 -
Hepe08g2281 329 SUPERFAMILY t-snare proteins 78 288 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Hepe08g2281 329 Coils Coil 184 204 - -
Hepe08g2281 329 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 233 295 IPR000727 -
Hepe08g2281 329 SMART tSNARE_6 228 295 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1868 Hepe-Chr3:75673683 Hepe08g2281 Hepe-Chr8:62520491 2.00e-126 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2281 K08489 - csv:101207998 578.941