Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2352 ATGGCATTAGAAGCTGTTGTTTTTCCTCAAGATCCATTAAATTACAATGGAAGCAAAGATCTTTACAGCTTGTTTGGAGGAGGGATTTGGACAAATGGAAACTTTGAATTTTCCCAAATCCCTCATGATTTTCCCGAGAACCAAACAGAAAGTTTCCCATTTGCAGATTGGAACTCATCCTCCTCTGTTTTCATCCCTAATCCTTCCCCTGAAGCTGTCATTTCTCCAAATCCGCCATTGGAGCCTGAATCAAGAACTCCAAATCCAATTCGACCAAGAAAAAGAAGACCCAAATCCCGCAAGAACAAAGAGGAAATAGAAAATCAAAGAATGACTCACATTGCTGTTGAAAGAAATCGAAGAAAACAGATGAATGAATATCTCTCTGTTCTTCGATCTTTAATGCCAGATTCTTATGTCCAAAGGGGGGATCAAGCTTCAATTATTGGGGGAGCAATTAATTTTGTGAAGGAGTTAGAGCAGCAAGTTCAATTTCTTTCAACAACTCAAAAGGAATCAAAAGAGAATAATAATGATGATGATGATAATTCAGAAGGTTGTTGTAATTCTAATTGTTCTTCAAAACTTCCTTTCTCTGAGTTCTTTAGCTTCCCTCAGTTCAAATCAATGGAGGGAAATTGTTCTTCTGTGAGTGAAAATGAAACTCAATGTTCTTCCATTGCTGATATTGAAGTAACAATGGTGGAAAATCATGCAAATTTGAAAATCAGATCAAAGAGAAGACCAAAACAAGCATTGAAAATTGTTGCTGGCTTGCATTCTCTTTCCCTCTCTGTTCTTCATCTCAATATCTCAACCATGAATCAATTTGCTCTTTACTGTCTCAGTGTTAAGGTTGAAGATGATTGCAAGCTGACTTCTGTTGATGAAATTGCTTCTGCTCTGCATCAGTTGCTTAGTAGAATAGAAGAAGAATCACTTATGAACTGA 951 36.91 MALEAVVFPQDPLNYNGSKDLYSLFGGGIWTNGNFEFSQIPHDFPENQTESFPFADWNSSSSVFIPNPSPEAVISPNPPLEPESRTPNPIRPRKRRPKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQQVQFLSTTQKESKENNNDDDDNSEGCCNSNCSSKLPFSEFFSFPQFKSMEGNCSSVSENETQCSSIADIEVTMVENHANLKIRSKRRPKQALKIVAGLHSLSLSVLHLNISTMNQFALYCLSVKVEDDCKLTSVDEIASALHQLLSRIEEESLMN 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 63733114 63734401 + Hsped.08g23520.1 Hepe08g2352 578324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2352 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 108 159 IPR011598 GO:0046983(InterPro)
Hepe08g2352 316 PANTHER MAX DIMERIZATION, MAD 1 308 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe08g2352 316 MobiDBLite consensus disorder prediction 71 86 - -
Hepe08g2352 316 Gene3D - 99 187 IPR036638 GO:0046983(InterPro)
Hepe08g2352 316 SMART finulus 114 165 IPR011598 GO:0046983(InterPro)
Hepe08g2352 316 MobiDBLite consensus disorder prediction 167 186 - -
Hepe08g2352 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 108 172 IPR036638 GO:0046983(InterPro)
Hepe08g2352 316 MobiDBLite consensus disorder prediction 68 109 - -
Hepe08g2352 316 Pfam Helix-loop-helix DNA-binding domain 109 160 IPR011598 GO:0046983(InterPro)
Hepe08g2352 316 Coils Coil 156 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2352 Hepe-Chr8:63733114 Hepe10g0469 Hepe-Chr10:5422246 5.05e-80 dispersed
Hepe08g2352 Hepe-Chr8:63733114 Hepe05g1757 Hepe-Chr5:67888506 4.09e-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56271 PF00010 HLH 4.30E-10 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2352 - - - 0.0