Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2448 ATGGAACCCAATGAAAACCAGCTCAGCTCCTACTTCCACCACCATCAACACCACCATCAAACTCCCACCACCACATCGCCGACCAATGGCCTTTTACCTCCCACCCACCACCTCTCCTCCGCCGCCGACGCTTCTCCCCACGTCGGTTACCCTCACTCTGTCCCCTCCGCCGCCGTCTCCTCCTCCCCTCTCGAACCCGCTCGCCGGAAGAGAGGCCGTCCAAGGAAGTACGGCACGCCGGAGGAAGCTTTAGCGGCTAAGAAAGCTGCTACGGCCTCGTCTCACTCTTCGTCCTCCAGAGCCAAGAAAGACCTCGCTTCTCCCTCTTCTCTTAATGCCGTTTCCGCTTCTTCTCCCTTCTCCGTTGCGCCTTCCAAGAAATCTCAGTTGGCTGCACTTGGTAATGCAGGCCAAGGTTTTGCACCACATGTTATTAATGTGGCAGCTGGTGAGGACGTGGGCCAGAAAATTATGCTGTTTATGCAACAATGTAAGCGGGAAATCTGTATTCTTTCTGCATCTGGATCAATCTCTAATGCATCTCTCCGTCAGCCAGCCACATCCGGAGGCAATATTACATATGAGGGTCGTTTTGAGATTGTTTCGTTATGCGGATCTTATGTACGAACTGACATCGGAGGAAAGACCGGTGGTCTTAGTGTATGTTTGTCGAGTTCTGATGGCCATATCATAGGAGGGGGAGTTGGCGGAACGTTGAAGGCTGCTGGACCCGTGCAGGTTATTGTTGGTACCTTTGTAATTGACCCGAAGAAGGAAGTTGGCGGTGTTAAAGGCGATGCATCTGCTGGCAAGTTGCCCTCACCTATTGGTGGGACATCGATGTCAAATCTACGCTATGGCTCGAACATGGACTCGGGAGGTAATCAAGTCAGGGGAAATGATGAGCACCAAGGTATTGGGGAGAGTCATTTCTTGCTTCAGCCCCGGGGAGTGAATCTGACGTCTCAGCGATCTACAGACTGGAGGACGGGTCTGGATGCCACAAACTCTGCTTATGATTTGACAGGAAGAACAGGCCATCATTCTCCCGAAAACGGAGATTACGATCAGATTCCCGATTGA 1083 52.17 MEPNENQLSSYFHHHQHHHQTPTTTSPTNGLLPPTHHLSSAADASPHVGYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSRAKKDLASPSSLNAVSASSPFSVAPSKKSQLAALGNAGQGFAPHVINVAAGEDVGQKIMLFMQQCKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLCGSYVRTDIGGKTGGLSVCLSSSDGHIIGGGVGGTLKAAGPVQVIVGTFVIDPKKEVGGVKGDASAGKLPSPIGGTSMSNLRYGSNMDSGGNQVRGNDEHQGIGESHFLLQPRGVNLTSQRSTDWRTGLDATNSAYDLTGRTGHHSPENGDYDQIPD 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 65462238 65469379 - Hsped.08g24480.1 Hepe08g2448 578420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2448 360 CDD DUF296 142 252 IPR005175 -
Hepe08g2448 360 Pfam Plants and Prokaryotes Conserved (PCC) domain 142 252 IPR005175 -
Hepe08g2448 360 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 275 IPR039605 GO:0003680(InterPro)
Hepe08g2448 360 MobiDBLite consensus disorder prediction 21 35 - -
Hepe08g2448 360 Gene3D - 142 263 - -
Hepe08g2448 360 SUPERFAMILY AF0104/ALDC/Ptd012-like 139 253 - -
Hepe08g2448 360 ProSiteProfiles PPC domain profile profile. 136 276 IPR005175 -
Hepe08g2448 360 MobiDBLite consensus disorder prediction 90 110 - -
Hepe08g2448 360 MobiDBLite consensus disorder prediction 1 110 - -
Hepe08g2448 360 MobiDBLite consensus disorder prediction 337 360 - -
Hepe08g2448 360 MobiDBLite consensus disorder prediction 263 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1523 Hepe-Chr8:19506738 Hepe08g2448 Hepe-Chr8:65462238 8.76e-54 dispersed
Hepe08g2448 Hepe-Chr8:65462238 Hepe10g0420 Hepe-Chr10:4705638 8.15e-16 dispersed
Hepe08g2445 Hepe-Chr8:65405116 Hepe08g2448 Hepe-Chr8:65462238 2.60e-08 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2448 - - - 0.0