Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2458 ATGGCGGATAAAGGCAGAGACGGCGGCAATTCGAGTTTACTCGACGGGAAATACGAATTAGGCCGTCTTCTAGGGCACGGAACATTCGCCAAGGTCTACCATGCCCGGAATCTGCGAACGGGGAAGAGCGTTGCGATGAAAGTGGTTGGGAAGGAGAAGATTATCAAAGTCGGTATGACGGAGCAGATCAAGAGAGAAATCTCTGTGATGAAAATGGTGAAGCATCCGAATATTGTGGATCTTCATGAGGTGATGGCGAGTAAATCGAAGATCTACTTCGCGATGGAGCTCGTTAGAGGCGGCGAACTGTTCTCCAAAATCGCGAAAGGTCGATTGCGTGAGGATGTAGCTAGGGTTTACTTTCAGCAATTGATCTCTGCAATCGATTTCTGCCATAGCCGTGGAGTTTACCACCGCGATCTCAAACCGGAGAATCTCCTCCTCGACGAAGACGGTAACCTTAAGGTCACCGATTTCGGCCTCACCGCCTTCTCAGAGCACTTGAAGCAAGACGGATTGTTGCACACGACGTGCGGAACTCCGGCGTACGTCGCACCGGAGGTCATCGGAAAGCAGGGATACGACGGAGCTAAAGCCGATCTATGGTCTTGTGGAGTCATCCTCTACGTTCTTCTCGCTGGATACCTTCCATTTCAGGACGACAACATGGTGGCGATGTACCGGAAAATTTACAGAGGCGACTTCAAATGTCCGCCGTGGTTCTCTTCCGAAGCCCGCCGCCTCATCACGAAGCTTCTAGATCCGAATCCGGTGACCAGAATCGGAATCGCGAAGATCACATCGTCGTCGTGGTTCAAGAAATCGGTACCGAAGACGATGATTACGAAGGAGGAGCAAGAAAAAACCGAGGCAAATCTGACGAAATCGAAGCAACCGGCGGAGATACTGAACGCGTTCCACATAATATCGTTATCGGAAGGGTTCGATCTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAGGAGAAAGATGAGATGAGATTCGCAACTTCGTCGACGGCGAGCAGTGTGATATCAAAGCTTGAAGAAGTGGCGAAGGCGGTGAAGTTCGATGTGAAGAAGAGCGAATCGTGGGTTCGATTGCAAGGGCAAGAGAAGGGGAGAAAAGGGAAACTGGCGATTGCGGCGGATATCTTCGTGGTAACGCCGTCGTTTGTGGTGGTGGAGGTGAAGAAGGACAACGGAGATACATTGGAGTACAATCAGTTCTGCAGGACGGAGCTCCGGCCGGCGTTGAAGGACATTGTTTGGACATCTCCGACTGGGAATTCAACTCCAGCTTGA 1302 51.23 MADKGRDGGNSSLLDGKYELGRLLGHGTFAKVYHARNLRTGKSVAMKVVGKEKIIKVGMTEQIKREISVMKMVKHPNIVDLHEVMASKSKIYFAMELVRGGELFSKIAKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADLWSCGVILYVLLAGYLPFQDDNMVAMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPVTRIGIAKITSSSWFKKSVPKTMITKEEQEKTEANLTKSKQPAEILNAFHIISLSEGFDLSPLFEEKKREEKDEMRFATSSTASSVISKLEEVAKAVKFDVKKSESWVRLQGQEKGRKGKLAIAADIFVVTPSFVVVEVKKDNGDTLEYNQFCRTELRPALKDIVWTSPTGNSTPA 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 65577880 65579732 + Hsped.08g24580.1 Hepe08g2458 578430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2458 433 CDD CIPK_C 304 419 - -
Hepe08g2458 433 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g2458 433 SMART serkin_6 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g2458 433 Gene3D Phosphorylase Kinase; domain 1 15 99 - -
Hepe08g2458 433 FunFam Non-specific serine/threonine protein kinase 10 97 - -
Hepe08g2458 433 FunFam Non-specific serine/threonine protein kinase 9 299 - -
Hepe08g2458 433 Pfam NAF domain 301 360 IPR004041 GO:0007165(InterPro)
Hepe08g2458 433 Gene3D Kinase associated domain 1, KA1 300 424 - -
Hepe08g2458 433 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524(InterPro)
Hepe08g2458 433 FunFam Non-specific serine/threonine protein kinase 298 423 - -
Hepe08g2458 433 SUPERFAMILY Protein kinase-like (PK-like) 15 289 IPR011009 -
Hepe08g2458 433 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 416 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Hepe08g2458 433 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g2458 433 CDD STKc_SnRK3 17 271 - -
Hepe08g2458 433 ProSiteProfiles NAF domain profile. 298 322 IPR018451 GO:0007165(InterPro)
Hepe08g2458 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g2458 433 Gene3D Transferase(Phosphotransferase) domain 1 100 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1295 Hepe-Chr2:16313192 Hepe08g2458 Hepe-Chr8:65577880 8.89e-165 dispersed
Hepe05g0144 Hepe-Chr5:1724092 Hepe08g2458 Hepe-Chr8:65577880 3.56e-45 dispersed
Hepe08g0685 Hepe-Chr8:6177260 Hepe08g2458 Hepe-Chr8:65577880 3.14e-174 dispersed
Hepe08g2458 Hepe-Chr8:65577880 Hepe09g0673 Hepe-Chr9:6368696 5.04e-131 dispersed
Hepe09g0892 Hepe-Chr9:8937139 Hepe08g2458 Hepe-Chr8:65577880 1.21e-33 dispersed
Hepe10g1065 Hepe-Chr10:42453100 Hepe08g2458 Hepe-Chr8:65577880 5.62e-07 dispersed
Hepe08g2458 Hepe-Chr8:65577880 Hepe09g0586 Hepe-Chr9:5510841 1.19e-259 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73088 PF00069 Pkinase 1.20E-72 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2458 - - - 0.0