Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2459 ATGAGACTCACCAACTCCCTCCCCGACCTCCATAGCCACCGCCGTAACCGGCTGCCGGAGACCGACGTCTCTCAACTCCACCAGCACCACCACCTTCAGTCCTCCCATTTCCATCCCTCTTCCTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCTCCATCCCCCCTCCCTGGGAACTCCCAAATCCCCACTCCGACCTCCCTCCTCAGCCACCGCCGCCGTCAAATCCAGACAATGCCGCATTTCAGATCGACGACACCACTCCGGCGGCCAAAATGGCCATGGCTATGCTTCACCAGCAGTTACTCGCCAACTCTACCGCCGCCGCCGCCGCAGATTCCGGTTTCCTTCCAATGCCTGGTAACGACATCGTTGAAATCGAAGGCTCTTCGTCCTTCAAATGCCCTAATCCGATTGGCGACGGTTCCGTCATTCCGTCTCTCTTCAACGAATTCGCCGGATTCCTGAACGCCTCCGGTCCCGGCCATATCCAGAACCAAAATCAATCTCAGAAACAGACCTTCGGAGCTCCGGTTTCCGTCAATACTCCACCGCCGGCGGCGGGTGGTGCTGCAGCACCGGCGCAGCCGCGGCAGAGAGTCAGAGCTCGGAGAGGACAAGCCACAGATCCTCACAGCATAGCAGAAAGATTACGAAGAGAGCGAATTGCAGAGAGAATGAAAGCTCTACAAGAACTTGTTCCCAACGCTAACAAGACAGACAAAGCTTCAATGCTGGATGAGATCATAGACTATGTAAAGTTCCTCCAGCTTCAAGTCAAAGTTCTGAGCATGAGCAGGTTGGGCGGTGCCACTGCGGCAATGACTTCCCTTGTATCCGATATTTCCTCTGAGGGTGGCACTGATGGTAACCAGTCCAATGGAACCGGTGGGGTCGGCGGACAGACCTCCGTTGGAGCTCCGTCGAGTAACGAAGCGATGACGATGACAGAGCACCAGGTGGTGAAGTTAATGGAGGAGGACATGGGATCCGCCATGCAGTACTTGCAAGGCAAAGGCCTCTGCCTCATGCCCATCTCTCTCGCCACCGCTATCTCCACCGCCACTTGTCACAGCCGCCCCATCACGGCGTCAAAAGGCGGAGGAGAATGCCCCACCTCCCCCAGCCTGTCTGCGTTGACCGTCCAGTCATCCGCCTTGGGTAACGGCACCGTTGACAGAGCCGTCAGAGACTCCACCTCCGTTTCGCAGCCGTGA 1221 57.08 MRLTNSLPDLHSHRRNRLPETDVSQLHQHHHLQSSHFHPSSFSSDDFLDQILSSIPPPWELPNPHSDLPPQPPPPSNPDNAAFQIDDTTPAAKMAMAMLHQQLLANSTAAAAADSGFLPMPGNDIVEIEGSSSFKCPNPIGDGSVIPSLFNEFAGFLNASGPGHIQNQNQSQKQTFGAPVSVNTPPPAAGGAAAPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGATAAMTSLVSDISSEGGTDGNQSNGTGGVGGQTSVGAPSSNEAMTMTEHQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRPITASKGGGECPTSPSLSALTVQSSALGNGTVDRAVRDSTSVSQP 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 65616674 65621561 - Hsped.08g24590.1 Hepe08g2459 578431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2459 406 Gene3D - 205 275 IPR036638 GO:0046983(InterPro)
Hepe08g2459 406 FunFam Transcription factor bHLH66 205 270 - -
Hepe08g2459 406 MobiDBLite consensus disorder prediction 161 181 - -
Hepe08g2459 406 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 352 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Hepe08g2459 406 MobiDBLite consensus disorder prediction 161 212 - -
Hepe08g2459 406 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 257 IPR011598 GO:0046983(InterPro)
Hepe08g2459 406 SMART finulus 214 263 IPR011598 GO:0046983(InterPro)
Hepe08g2459 406 MobiDBLite consensus disorder prediction 53 80 - -
Hepe08g2459 406 Pfam Helix-loop-helix DNA-binding domain 213 258 IPR011598 GO:0046983(InterPro)
Hepe08g2459 406 MobiDBLite consensus disorder prediction 57 79 - -
Hepe08g2459 406 MobiDBLite consensus disorder prediction 284 311 - -
Hepe08g2459 406 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 267 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0462 Hepe-Chr6:25633955 Hepe08g2459 Hepe-Chr8:65616674 2.70e-13 dispersed
Hepe08g2224 Hepe-Chr8:61989217 Hepe08g2459 Hepe-Chr8:65616674 4.61e-16 dispersed
Hepe08g2459 Hepe-Chr8:65616674 Hepe09g1511 Hepe-Chr9:38643167 1.55e-49 dispersed
Hepe08g2459 Hepe-Chr8:65616674 Hepe09g0590 Hepe-Chr9:5547958 1.26e-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56276 PF00010 HLH 1.50E-09 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2459 - - - 0.0