Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2460 ATGGCGGGTAATGGAGTTTTTGCAGAGATTATCGATGGTGAAGTTTACAAATACTATTCCCAAGGAGAGTGGAAGAACTCTTCCTCCGGGAAAACCGTCGCCATTATCAACCCCACTACCAGGAAAACTCAATACAGAGTTCAAGCTTGTAACCAAGAGGAGGTTAATAAAGTGATGGAAATAGCCAAAACTGCTCAGAAATCATGGGCAAAGACTCCATTGTGGAAGAGAGCTGAGCTTCTTCACAAAGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAGTGTTTGGTGAAGGAAATTGCAAAACCAGCCAAAGATGCTGTTGTGAGATCTGGGGATCTTGTTTCATATTGTGCTGAAGAAGGTGTTAGGATCTTGGGAGAGGGGAAGTTCTTGGTTTCTGATAGCTTCCCTGGAAATGAAAGGACCAAATATTGCCTTACTTCCAAGATCCCACTTGGTGTGATTTTAGCCATTCCTCCATTCAACTATCCTGTCAATCTGGCTGTTTCAAAAATCGCCCCGGCTTTGATTGCTGGAAATTCCATCGTCCTCAAGCCTCCAACTCAGGGTGCTGTTTCTGCTCTCCACATGGTACATTGCTTCCATCTAGCTGGTTTTCCTAAAGGCCTTATTAGTTGTGTCACTGGTAGAGGCTCAGAGATCGGCGATTTCCTCACGATGCATCCGGGTGTCGACTGTATAAGCTTTACCGGTGGAGATACCGGTGTTGCAATTTCAAAGAAGGCAGGCATGATACCTCTTCAGATGGAACTGGGAGGCAAAGATGCCTGCATTGTGCTCGAGGATGCCGATCTCGATTTAGTTGCCGCAAACATTATAAAGGGAGGCTTTTCTTACAGTGGCCAAAGGTGTACTGCCGTCAAGGTTGTTTTGGTAATGGAGTCCGTAGCAGATGCTTTGGTCGAGAAAGTAAAGGCCCGGGTGTCTAAATTAACTGTCGGTGCTCCGGAAGACGACTCGGACATTACTCCAGTCGTGACTGAGTCGTCGGCGAATTTCATTGAAGGGTTGGTAATGGATGCAAAGGAAAAGGGAGCAACATTTTGCCAAGAGTACAGAAGAGAGGGCAACCTCATATGGCCCTTGTTGTTAGATAATGTTAGGCCTGATATGAGGATTGCATGGGAGGAACCTTTTGGACCAGTTTTGCCAGTCATAAGAATCAGTTCTGTTGAAGAAGGAATCCACCATTGTAATGCTAGCAACTTTGGACTTCAGGGATGTGTCTTCACAAAGGACATCAACAAGGCGATATTGATAAGCGACGCAATGGAAACCGGGACAGTTCAAATCAACTCTGCGCCTGCTCGAGGACCCGATCATTTCCCATTCCAGGGAATCAAGGACAGTGGAATTGGTTCTCAAGGAGTCACCAACAGCATCAACATGATGACCAAAGTGAAGACCACAGTTATCAACTTGCCTACACCTTCCTACACCATGGGTTAG 1482 45.95 MAGNGVFAEIIDGEVYKYYSQGEWKNSSSGKTVAIINPTTRKTQYRVQACNQEEVNKVMEIAKTAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGRGSEIGDFLTMHPGVDCISFTGGDTGVAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVKARVSKLTVGAPEDDSDITPVVTESSANFIEGLVMDAKEKGATFCQEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRISSVEEGIHHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGVTNSINMMTKVKTTVINLPTPSYTMG 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 65631740 65637705 - Hsped.08g24600.1 Hepe08g2460 578432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2460 493 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 264 454 IPR016163 GO:0016620(InterPro)
Hepe08g2460 493 Pfam Aldehyde dehydrogenase family 24 480 IPR015590 GO:0016491(InterPro)
Hepe08g2460 493 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 264 454 - -
Hepe08g2460 493 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 288 299 IPR016160 GO:0016491(InterPro)
Hepe08g2460 493 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 22 278 - -
Hepe08g2460 493 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 260 267 IPR029510 GO:0016491(InterPro)
Hepe08g2460 493 PANTHER ALDEHYDE DEHYDROGENASE 9 492 IPR051020 GO:0008911(PANTHER)
Hepe08g2460 493 SUPERFAMILY ALDH-like 15 484 IPR016161 GO:0016491(InterPro)
Hepe08g2460 493 CDD ALDH_F11_NP-GAPDH 15 484 - -
Hepe08g2460 493 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 480 IPR016162 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2460 Hepe-Chr8:65631740 Hepe09g0167 Hepe-Chr9:1327546 1.84e-48 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2460 K00131 - csv:101208699 961.444