Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2470 ATGTGTGTGACTGATTCAGAGCAGGTTGGAACTGAGAGGCCAATTTCTGGAGCTAATAATACCAAGCCATGGCCTCCTATGCATTGTGAATTTTTGCAGAATCAGATGGGAAATCCTGATAAGGATCCTGCTCTCACTGGAACTAGCGACCGAACCCACTCTGGGAATTCTTTTACTCTTGAAAGCATTTCTGAGGATGCTGCAGTTATTGACAGGAAAGAGAACCCAACTACTTTTGTTCCTGCACTTAGATCAGGAGAATGGTCTGATATCGGAAAGCGTCCTTATATGGAGGACACTCATGTATGCATTCATGACATGGCTAAGAAGTTTGGCTGTAGTTTTCTCAATGAGGAAGCTGTCTCCTTCTATGGTGTATTCGATGGTCATGGAGGAAAAAGTGCCGCACAATTTGTTCGTGACCACTTGCCGAGAGTCATTGTTGAAGATTCCGACTTTCCTTTAGAGCTTGAAAAGGTGGTGACAAGGTCGTTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCACTCTTGAGACATCTCTATCTTCTGGCACAACTGTTCTGACTGCAATGATATTTGGAAGGTCTTTGCTCGTAGCAAATGCTGGCGATTGCCGAGCGGTAATGTCAAGACAAGGATGTGCAATAGAAATGTCTAAAGACCACAGGCCATGCTGCACAAAAGAGAGAAAGCGAATTGAGGCCTTGGGTGGATTTGTTGACGACGATTATCTAAATGGCCTGCTCGGGGTTACACGTGCTATAGGAGATTGGCATCTTGAAGGAATGAAGGAAATGAGTGAAAGTGGTGGACCGCTAAGTGCCGAACCTGAACTTAGACTAATGACATTGACGAAGGAGGACGAGTTCTTGATCATAGGTAGTGATGGAATATGGGACGTCTTCACGAGTCAAAATGCTGTCGATTTTGCTCGGAGGAAGCTCCAAGAGCACAATGATGTGAGAGTTTGCTGCAAGCAAATAGTAGAAGAAGCCATAAAGAGAGGAGCAACAGACAATTTAACAGTAGTCTTGGTTAGCTTTCACATGGAGCCACCTCCACCTGTAGTTTTTCAGAGGCCAAGATTTAGAAGAAGCATTTCTGCTGAGGGACTTCAAAACCTCAAATTTCTTCTAGAAGGATAG 1149 44.3 MCVTDSEQVGTERPISGANNTKPWPPMHCEFLQNQMGNPDKDPALTGTSDRTHSGNSFTLESISEDAAVIDRKENPTTFVPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYGVFDGHGGKSAAQFVRDHLPRVIVEDSDFPLELEKVVTRSFMETDAAFARSCTLETSLSSGTTVLTAMIFGRSLLVANAGDCRAVMSRQGCAIEMSKDHRPCCTKERKRIEALGGFVDDDYLNGLLGVTRAIGDWHLEGMKEMSESGGPLSAEPELRLMTLTKEDEFLIIGSDGIWDVFTSQNAVDFARRKLQEHNDVRVCCKQIVEEAIKRGATDNLTVVLVSFHMEPPPPVVFQRPRFRRSISAEGLQNLKFLLEG 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 65762522 65770849 + Hsped.08g24700.1 Hepe08g2470 578442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2470 382 PANTHER PROTEIN PHOSPHATASE 2C 73 349 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Hepe08g2470 382 SMART PP2C_4 74 347 IPR001932 -
Hepe08g2470 382 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169(InterPro)
Hepe08g2470 382 SUPERFAMILY PP2C-like 75 350 IPR036457 -
Hepe08g2470 382 CDD PP2Cc 84 349 IPR001932 -
Hepe08g2470 382 Gene3D - 67 352 IPR036457 -
Hepe08g2470 382 FunFam Probable protein phosphatase 2C 22 68 352 - -
Hepe08g2470 382 MobiDBLite consensus disorder prediction 1 18 - -
Hepe08g2470 382 Pfam Protein phosphatase 2C 96 341 IPR001932 -
Hepe08g2470 382 ProSiteProfiles PPM-type phosphatase domain profile. 84 349 IPR001932 -
Hepe08g2470 382 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0022 Hepe-Chr3:251469 Hepe08g2470 Hepe-Chr8:65762522 1.17e-73 dispersed
Hepe03g1809 Hepe-Chr3:75003845 Hepe08g2470 Hepe-Chr8:65762522 1.24e-84 dispersed
Hepe08g2470 Hepe-Chr8:65762522 Hepe10g0050 Hepe-Chr10:463067 5.49e-37 dispersed
Hepe01g2353 Hepe-Chr1:88046733 Hepe08g2470 Hepe-Chr8:65762522 1.68e-108 transposed
Hepe02g3473 Hepe-Chr2:84027039 Hepe08g2470 Hepe-Chr8:65762522 3.54e-37 transposed
Hepe09g0367 Hepe-Chr9:3237816 Hepe08g2470 Hepe-Chr8:65762522 6.43e-29 transposed
Hepe01g1955 Hepe-Chr1:84375311 Hepe08g2470 Hepe-Chr8:65762522 4.30e-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56278 PF00481 PP2C 6.30E-66 CL0238 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2470 K14803 - csv:101210349 718.768