Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe08g2481 | ATGTCGGGTTGGGATGAAGGAGGAATCTACTACAGCGACCAAGCGCAGTCCCTCGGCGACGGAACCGGCGGCGTCGGCGGTCGCAGCGGAGATGCCGACGAGAAGGCCACTCATCACTCCGTCCTTCGCAAATTCAAGGAGTTCATCCGTGGTTTTGAAGCCGACAAGAATGTTTTCCCTTACAGAGAGAGCCTTCTCCACAATCCGAAGTTTCTTCGCGTTGATATGGAGGACGTTCACGCTTTTGACTCCGATCTTCCGTCCAAGCTTCGCTCTGCACCTGCCGACTACTTGCCCTTGTTTGAGACTGCTGCGGCGGAGGTTTTAATGAATTTAAAGACGAAGGTGGCTGGTGAGACTGGAGAGATGGTGGAGCCCGTGCCTGGGGATGTTCAAATTCTTCTAACGTCAAAGGAGGATTCGATCTCGTTGCGGTCACTTGGGGCTCAACACATTTCAAAACTTATTAAAATATCTGGAATCACAATTGCTGCGTCAAGGATCAAGGCAAAGGCAACATATGTGACATTATTGTGTAAAAACTGTAGAAGTACACTAAGAGTTCCGTGTCGGCCAGGACTTGGAGGGGCAGTTGTCCCTCGATCATGTAATCATATGCCCCAGGCCGGAGAAGAACCATGCCCACTGGATCCTTGGATTGTGGTTCCTGATAAGAGCATGTATGTTGATTTACAGACGTTAAAATTGCAGGAAAACCCAGAAGATGTGCCAACAGGGGAACTTCCTAGGAACATGCTTCTATCTGTAGATAGACATCTTGTTCAAACAATTGTTCCAGGCACTAGATTGACCATCATGGGGATATACAGTATCTTTCAAGCTGCCAATTCTACCGCATCCCACAAAGGAGCTGTTGCAATCAGACAGCCTTATATAAGGGTTGTAGGAATTGAAGAATCTACTGACGCTAACTCTCGGGGCCCTGCATCTTTCACAGCAGAAGATATAGAAGAGTTCAAAAAATTTGCAGCAGATCCTGATGTCTATAAAAACATATGTTCAAAGATTGCCCCCTCTATATTTGGTCATGAGGATGTGAAGAAGGCCGTGGCTTGTCTTTTATTTGGAGGATCCAGGAAGAATTTGCCAGATGGTGTTAAGTTAAGAGGTGACATTAATGTATTACTCTTGGGGGACCCGTCTACAGCTAAATCCCAGTTTCTCAAGTTTGTTGAGAAGACAGCTCCAATTGCTGTTTATACTTCTGGAAAAGGTTCTTCAGCTGCTGGTCTTACAGCTTCAGTGATACGAGACAACAGCTCTCGAGATTTTTATCTTGAAGGAGGTGCAATGGTTTTGGCTGATGGAGGGGTTGTCTGCATTGATGAGTTTGACAAAATGAGACCAGAGGATAGAGTTGCTATTCATGAAGCCATGGAACAACAGACAATATCAATTGCTAAAGCAGGAATAACAACGGTTCTTAATTCCAGAACCTCAGTGCTTGCAGCTGCTAATCCTCCATCGGGACGTTATGATGATCTTAAGACAGCCCAGGATAACATTGATTTGCAGACTACAATTCTTTCCAGATTTGATTTAATTTTCATCGTGAAAGATATAAGGATGTACAGTCAAGATAAGATTATAGCAAGCCACATAATAAAAGTTCACGCATCCGCTCAGGCAACCTTGGGTGAAAATAGAGGTTCCAAAGAAGATGATTGGCTGAAGAGGTATCTTCAATATTGTCGAAGTCAATGTTATCCCCGTTTGTCAGAATCTGCATCCGCAATGCTGCGGAATTATTATGTTAAAATCAGACAGGACATGAGACAACAAGCAAACGAAACAGGGGAGGCTGCTGCAATTCCGATTACAGTAAGGCAGCTGGAAGCTATAGTACGGTTAAGCGAGGCACTTGCAAAAATGAAATTGTCCCATGTTGCAACTGAGGAAAATGTGCAGGAAGCTATTAGACTTTTTACTGTGTCCACGATGGACGCAGCACGCTCTGGGATTCATCAGCAAGGAAATCTAACTCCTGAAATGGCTAATGAAATAAAGCAAGCAGAAACACAGATAAAGAGAAGAATAGGAATTGGCAACCAGTTCTCTGTGAGAAGGCTGATTGACGATCTCACCAAAATGGGGATGAACGAGTCAATTGTGAGAAGAGCTCTGATTATTATGCATCAGAGAGAGGAAGTTGAATATAAAAGAGAGAGGCGATTCATTCTCCGCAAGGCATAA | 2214 | 44.4 | MSGWDEGGIYYSDQAQSLGDGTGGVGGRSGDADEKATHHSVLRKFKEFIRGFEADKNVFPYRESLLHNPKFLRVDMEDVHAFDSDLPSKLRSAPADYLPLFETAAAEVLMNLKTKVAGETGEMVEPVPGDVQILLTSKEDSISLRSLGAQHISKLIKISGITIAASRIKAKATYVTLLCKNCRSTLRVPCRPGLGGAVVPRSCNHMPQAGEEPCPLDPWIVVPDKSMYVDLQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIFQAANSTASHKGAVAIRQPYIRVVGIEESTDANSRGPASFTAEDIEEFKKFAADPDVYKNICSKIAPSIFGHEDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDNSSRDFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHIIKVHASAQATLGENRGSKEDDWLKRYLQYCRSQCYPRLSESASAMLRNYYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHVATEENVQEAIRLFTVSTMDAARSGIHQQGNLTPEMANEIKQAETQIKRRIGIGNQFSVRRLIDDLTKMGMNESIVRRALIIMHQREEVEYKRERRFILRKA | 737 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 65901596 | 65908530 | + | Hsped.08g24810.1 | Hepe08g2481 | 578453 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe08g2481 | 737 | CDD | MCM5 | 338 | 652 | - | - | |
| Hepe08g2481 | 737 | Gene3D | - | 144 | 279 | IPR012340 | - | |
| Hepe08g2481 | 737 | ProSiteProfiles | MCM family domain profile. | 335 | 541 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe08g2481 | 737 | SMART | mcm | 140 | 654 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe08g2481 | 737 | Gene3D | - | 37 | 123 | - | - | |
| Hepe08g2481 | 737 | Gene3D | - | 316 | 671 | IPR027417 | - | |
| Hepe08g2481 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 571 | 586 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Hepe08g2481 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 145 | 160 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Hepe08g2481 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 171 | 183 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Hepe08g2481 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 295 | 307 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Hepe08g2481 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 647 | 664 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Hepe08g2481 | 737 | Pfam | MCM P-loop domain | 322 | 545 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe08g2481 | 737 | SUPERFAMILY | Nucleic acid-binding proteins | 44 | 301 | IPR012340 | - | |
| Hepe08g2481 | 737 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 34 | 723 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006270(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER) | |
| Hepe08g2481 | 737 | FunFam | DNA helicase | 171 | 229 | - | - | |
| Hepe08g2481 | 737 | FunFam | DNA helicase | 36 | 124 | - | - | |
| Hepe08g2481 | 737 | Pfam | MCM N-terminal domain | 43 | 119 | IPR027925 | - | |
| Hepe08g2481 | 737 | Pfam | MCM5, C-terminal domain | 677 | 735 | IPR054125 | - | |
| Hepe08g2481 | 737 | FunFam | DNA helicase | 316 | 667 | - | - | |
| Hepe08g2481 | 737 | Pfam | MCM AAA-lid domain | 563 | 652 | IPR041562 | - | |
| Hepe08g2481 | 737 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 345 | 653 | IPR027417 | - | |
| Hepe08g2481 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 436 | 450 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe08g2481 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 376 | 391 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe08g2481 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 488 | 500 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe08g2481 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 464 | 477 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe08g2481 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 515 | 523 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe08g2481 | 737 | ProSitePatterns | MCM family signature. | 444 | 452 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Hepe08g2481 | 737 | Pfam | MCM OB domain | 144 | 279 | IPR033762 | - | |
| Hepe08g2481 | 737 | Gene3D | - | 171 | 229 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe05g1030 | Hepe-Chr5:48747756 | Hepe08g2481 | Hepe-Chr8:65901596 | 6.93e-102 | dispersed | |
| Hepe08g2481 | Hepe-Chr8:65901596 | Hepe09g1860 | Hepe-Chr9:59246345 | 8.51e-94 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe08g2481 | K02209 | - | csv:101211822 | 1334.7 |