Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2484 ATGACTGTGGAGGATCGAAAGGCTAATTTGGTGGGTGAAAATGGGGAGATGGACCAGTTTCCTATTGGTATGCGTGTTCTTGCTGTGGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGCCAATATCATGTTACAACGACCAATCAGGCGGTTCAGGCGCTTAAAATGTTGAGGGAGAACAGAAACAAGTTTGATCTGGTTATCAGTGATGTAAACATGCCTGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGTCTTGAAATGGACCTACCTGTTATCATGCTATCTGCGCATAGCGATACCGAACTTGTAAAGAAGGGAGTTACTCACGGTGCTTGTGACTATTTGCTGAAACCTGTTCGAATTGAGGAACTGAAGAATATATGGCAACATGTCCTTCGGAGAAAGAAGCCCTCTGCTAAGAACCAAAATAAGTGCACTGGTGGAAATGACACTCCTTGTCAAACTGTTGAAGTTGCAAAATGTTTCCCATCTGCGGCCAGTGCTGATAACGGTAAACCTGGTAAAAGGCGGAAAGACCAAGACGACGATGAGGAAGGAGGTGAAGAAGAGAGTACTTATGAGAATGACGACTCTTCCACCCAAAAAAAGCAAAGGGTACTTTGGTTAGGAGAGTTGCACAGGAAGTTTATTGCAGCTGTTAACCATTTGGGCTATGAAAAGGCCGTACCTAAAAAGATCCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAAAACGTCGCTAGCCATCTTCAGAAATACAGACAATACCTTAAAAAAATGTGCACCAAGGAAGCTCAGCAATGTAACATGATGGCTGCATTTGGAGGTAAAGACACCTCCTTCAGGCCCATGGCTTCACTCAATGGATTTTCAATGACTGGAACAGGAAGGCTCTCGAATGCTACATTCTCGTCATATCCGTCTCGAGAAATTGTTGGTAGATTAAATTCTACTGCTGGATTGAGCTTACATGGAATTGCTTCCTCTGGAATGATCCAACAAGATCACATCCAGTTGCATCGGGACAACAAACACACTACGCCATTTAAAGAGTCTAATTTGATTAATGATGCCTCGAGTTTTACGGTTTCCACAAGCTTCCCTGATGCTAGAGTGCCTGTTGGTAGTTCTAGCAATTATGACTACGGTGTTTCAAGACATCCGTGGATGTTACAAGGACATAAGCAACAGATTCATGGCAGTGGAGAATATGGAGATCAGTCTTCTCTTAAGGTATCTCGAAACAACCCAGAACCCTTGGAAAGTGGCATGGGCGTTTCTAATATTTTGGGCCACGGTCAGTCTAACAAAAACTGGCAGGGTTCAATCCAGCTGCCCAAGTTTTCATCTAATGTTTCACTCACTGGAATTTACCCTCCTGATGGAATGCCTGCTATTAATTTGACGATTTCCTCGGCTCAGCCCGATTACGACAACTTTCCTGTTGGTTTTCCTTCAACAAGTGTGGATTCAAGTTCTCAGCTTGATTTAAGAGAGGAGACACAATGCTATGAAGAACTAATTGGTAGTGTTGTTGAAGCCATGAATGGAAGATCAAAACAACAATGGGAAGCAGCTGAACAGGATTACTATGCCAACCATAGTTCCATTGTGAGAAACTCTCTAGTTTCTGGGAATAGTGTTGCAAATCCATTGAACCAGGGTGCAGATCAGAAAAATGCAATCTGTCTCGAAAACATCGGTAGCTCTTTCACTAACCAGTTGAATAATGGTGCTCCAACCTTCATTCAACCCGGTGCGGAAATATCTGCGGAGGACACTTGGATGAACTACGACGGAAAAATTCTCATGGATTCAACAAAGCTACAAAATGGATTTGCAAATTCTAGTTTTAATTCCTTGGATGAGTTGGTGAATGTTTTGTCAAAACAGGATCAAGATCAATCTATTCAAATAAATGACGAATTTGGATTTGATGCTCAATCTCTCGGGTCGTCGTGTATATGA 1995 42.36 MTVEDRKANLVGENGEMDQFPIGMRVLAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVKKGVTHGACDYLLKPVRIEELKNIWQHVLRRKKPSAKNQNKCTGGNDTPCQTVEVAKCFPSAASADNGKPGKRRKDQDDDEEGGEEESTYENDDSSTQKKQRVLWLGELHRKFIAAVNHLGYEKAVPKKILDLMNVEGLTRENVASHLQKYRQYLKKMCTKEAQQCNMMAAFGGKDTSFRPMASLNGFSMTGTGRLSNATFSSYPSREIVGRLNSTAGLSLHGIASSGMIQQDHIQLHRDNKHTTPFKESNLINDASSFTVSTSFPDARVPVGSSSNYDYGVSRHPWMLQGHKQQIHGSGEYGDQSSLKVSRNNPEPLESGMGVSNILGHGQSNKNWQGSIQLPKFSSNVSLTGIYPPDGMPAINLTISSAQPDYDNFPVGFPSTSVDSSSQLDLREETQCYEELIGSVVEAMNGRSKQQWEAAEQDYYANHSSIVRNSLVSGNSVANPLNQGADQKNAICLENIGSSFTNQLNNGAPTFIQPGAEISAEDTWMNYDGKILMDSTKLQNGFANSSFNSLDELVNVLSKQDQDQSIQINDEFGFDAQSLGSSCI 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 66136653 66141511 + Hsped.08g24840.1 Hepe08g2484 578456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2484 664 MobiDBLite consensus disorder prediction 172 208 - -
Hepe08g2484 664 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Hepe08g2484 664 PIRSF RR_ARR_type-B 1 664 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Hepe08g2484 664 SUPERFAMILY Homeodomain-like 208 269 IPR009057 -
Hepe08g2484 664 Gene3D - 23 155 - -
Hepe08g2484 664 CDD REC_typeB_ARR-like 26 140 - -
Hepe08g2484 664 Pfam Myb-like DNA-binding domain 216 263 IPR001005 -
Hepe08g2484 664 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Hepe08g2484 664 FunFam Two-component response regulator 207 270 - -
Hepe08g2484 664 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 349 IPR045279 GO:0009736(InterPro)
Hepe08g2484 664 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Hepe08g2484 664 SUPERFAMILY CheY-like 23 149 IPR011006 -
Hepe08g2484 664 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677(InterPro)
Hepe08g2484 664 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Hepe08g2484 664 Gene3D - 207 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0399 Hepe-Chr3:5697466 Hepe08g2484 Hepe-Chr8:66136653 7.15e-42 dispersed
Hepe03g1866 Hepe-Chr3:75645452 Hepe08g2484 Hepe-Chr8:66136653 6.45e-18 dispersed
Hepe07g0188 Hepe-Chr7:1692460 Hepe08g2484 Hepe-Chr8:66136653 1.56e-42 dispersed
Hepe08g2484 Hepe-Chr8:66136653 Hepe10g0068 Hepe-Chr10:662676 2.07e-72 dispersed
Hepe05g0986 Hepe-Chr5:44811528 Hepe08g2484 Hepe-Chr8:66136653 2.02e-26 transposed
Hepe01g1979 Hepe-Chr1:84601864 Hepe08g2484 Hepe-Chr8:66136653 5.03e-117 wgd
Hepe08g2484 Hepe-Chr8:66136653 Hepe09g0595 Hepe-Chr9:5591848 7.96e-183 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56279 PF00072 Response_reg 4.80E-26 CL0304 Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2484 K14491 - csv:101203718 1038.87