Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2504 ATGGCTTTTCTTGTTTTCTCTGTTTCCAATTTAGTTCTCACCATATTCGCATCTGTCATTACGGCATTGATCTGCCCCCAAGCAGCTGGCTCAGGTATACCAGAAGTAAAGGCTTATCTGAATGGCGTGGATGCCCCTGGAATATTATCGCCCCAAACACTGTTAGTGAAGATTATTGGCAGCATTTCTATTGTGTCATCATCTATGATCGTTGGAAAAGCTGGACCTATGGTACATACAGGGGCATGTGTTGCATCCTTGGTAGGTCAGGGGGGTTTCAAAATATTTGGTTTAACATGGAGATGGCTATACCATCTCGAGAATGATCGAGATAGGCGGGATCTTGTAACATGTGGAGCCGCTGCTGGAATAGCTGCTGCATTTCGTGCTCCTGTTGGTGGTGTGCTGTTTGCTTTTGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTTTGTGGCGATCGTTTTTCACAACTGCTATAGTTGCTGTGGTATTACGCTCACTGATTGACATTTGTTTAAATGGATTATGTGGATTATTTGGTAAAGGGGGACTTATAATATTTGATACCTACTCAGACTTTCCTACATACCACCTCGAGGATCTACCTCCTGTGCTTGTCCTTGCTTTTATTGGAGGCATACTTGGAAGCTTATATAATTTTCTTTTGAACAAAGTTCTTCGCGTTTACAATCTCATACACGAGAAAGGCATTGTTTACAAAATTTTACTGGCTTGCTCTGTCTCAATTTTCACATCCTGTCTTCTTTTTGGATTACCATGGTTCGCACCATGCCAACCTTGCCCATCAGGTGCTCGAGAAATTTGTCCTACGATAGGCCGATCTGGTAACTTCAAGAAGTTTCAGTGTGCTCCTGGTCACTACAATGATCTTGCAAGTCTCATATTTAACACCAATGATGATGCCATAAAAAATCTCTTTAGCAAGGACACAGACTCTGAGTTCCATTTCTCATCAATGCTCACATTTTTCATTACCTGTTTTTCCTTGAGCATTCTCAGTTATGGGACGGTTGCTCCTGTCGGCCTGTTTGTCCCTGTTATTGTGACTGGAGCTTCTTATGGTCGTTTTGTCGGAATGGTTGTCGGTCCATACACAAACCTCAGCCACGGCTTCTTTGCCATATTGGGTGCCGCTTCATTTCTCGGGGGTTCAATGCGGACAACAGTTTCTCTCTGTGTTATTATGCTTGAATTGACCAATAATTTGTTGTTGCTGCCTTTAGTAATGCTGGTTCTCCTTATTTCCAAGACTGTAGCTGATGCTTTCAACAGTAATATATATAACTTGATCATGAAAGCGAAAGGCTTTCCTTATCTAGAAGGCCATGTTGAGCCATACATGAGGCAGCTGACTGTTGCCGATGTGTTAACGAGTCCGCTTCAAGTATTGCATGGCATTGAGAAGGTTCGTAATGTAGTAGACATTCTCAAATGGACAAGTCATCATGGATTTCCTGTCGTTAACGAGCCTCCTTTCTCTGAATTTCCTGTTTTATATGGCCTAATTCTCAGAGCCCATCTTATTGTGTTGCTAAAGAAGAAAGCTTTCTTGCCCGTTCCAACACTAGGATCAGAAAGAAAGGATGCCTTTAAGCTATTCTCAACTGATGATTTTGCAAAGATGGGTTTGGGCGACGTTGATAGAATTGAAGGTGTACAATTGACCGACGAAGAGATGGAGATGTTCATTGATCTACATCCATTCGCTAATACTTCACCTTGTACCGTCTTGGAAACGATGTCATTAGCAAAGGCTCTTGAAATTTTTCGAGAAACTGGTTTAAGACACATGCTGGTGATACCCAAGGTCCCTGGGAGATCGCCCGTGGTTGGTGTATTGACTCGGCACGACTTCATGCCAGATTACATTCTGAGTTTGCATCCATTGCTAGAGAAGAGCAGATGGAAAAGGTTAAGAATCAAATTTCACCTGAAGAAAAAGTTCTTCTAG 1974 42.5 MAFLVFSVSNLVLTIFASVITALICPQAAGSGIPEVKAYLNGVDAPGILSPQTLLVKIIGSISIVSSSMIVGKAGPMVHTGACVASLVGQGGFKIFGLTWRWLYHLENDRDRRDLVTCGAAAGIAAAFRAPVGGVLFAFEEMASWWRSALLWRSFFTTAIVAVVLRSLIDICLNGLCGLFGKGGLIIFDTYSDFPTYHLEDLPPVLVLAFIGGILGSLYNFLLNKVLRVYNLIHEKGIVYKILLACSVSIFTSCLLFGLPWFAPCQPCPSGAREICPTIGRSGNFKKFQCAPGHYNDLASLIFNTNDDAIKNLFSKDTDSEFHFSSMLTFFITCFSLSILSYGTVAPVGLFVPVIVTGASYGRFVGMVVGPYTNLSHGFFAILGAASFLGGSMRTTVSLCVIMLELTNNLLLLPLVMLVLLISKTVADAFNSNIYNLIMKAKGFPYLEGHVEPYMRQLTVADVLTSPLQVLHGIEKVRNVVDILKWTSHHGFPVVNEPPFSEFPVLYGLILRAHLIVLLKKKAFLPVPTLGSERKDAFKLFSTDDFAKMGLGDVDRIEGVQLTDEEMEMFIDLHPFANTSPCTVLETMSLAKALEIFRETGLRHMLVIPKVPGRSPVVGVLTRHDFMPDYILSLHPLLEKSRWKRLRIKFHLKKKFF 657
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 66312765 66317982 + Hsped.08g25040.1 Hepe08g2504 578476
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2504 657 Gene3D - 448 629 IPR046342 -
Hepe08g2504 657 Pfam CBS domain 579 627 IPR000644 -
Hepe08g2504 657 SUPERFAMILY CBS-domain pair 450 627 IPR046342 -
Hepe08g2504 657 ProSiteProfiles CBS domain profile. 577 637 IPR000644 -
Hepe08g2504 657 PRINTS Chloride channel signature 57 76 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g2504 657 PRINTS Chloride channel signature 121 140 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g2504 657 PRINTS Chloride channel signature 434 448 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g2504 657 PRINTS Chloride channel signature 396 415 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g2504 657 PRINTS Chloride channel signature 26 43 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g2504 657 PRINTS Chloride channel signature 378 394 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g2504 657 PRINTS Chloride channel signature 346 366 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g2504 657 PRINTS Plant CLC chloride channel signature 298 314 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Hepe08g2504 657 PRINTS Plant CLC chloride channel signature 142 150 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Hepe08g2504 657 PRINTS Plant CLC chloride channel signature 156 166 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Hepe08g2504 657 PRINTS Plant CLC chloride channel signature 174 181 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Hepe08g2504 657 Gene3D Clc chloride channel 1 447 - -
Hepe08g2504 657 SMART cbs_1 580 633 IPR000644 -
Hepe08g2504 657 SMART cbs_1 467 520 IPR000644 -
Hepe08g2504 657 SUPERFAMILY Clc chloride channel 3 449 IPR014743 -
Hepe08g2504 657 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 1 628 IPR051280 GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER)
Hepe08g2504 657 Pfam Voltage gated chloride channel 15 428 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g2504 657 CDD CBS_pair_voltage-gated_CLC_euk_bac 459 629 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3395 Hepe-Chr2:83409427 Hepe08g2504 Hepe-Chr8:66312765 1.80e-226 dispersed
Hepe03g0183 Hepe-Chr3:2297330 Hepe08g2504 Hepe-Chr8:66312765 1.03e-177 dispersed
Hepe07g0546 Hepe-Chr7:5778568 Hepe08g2504 Hepe-Chr8:66312765 1.50e-246 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2504 K05016 - csv:101216071 1185.63