Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2532 ATGTCAAGCTGCATCAACAGTCCACAGGAGCAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAATATGGCTGCTGCTTTCCAATCTCTCTCTTGGCAAAATTCTCAGGCAGCAAACCACAGCCACAATGGCAGTGCAGCTGATCACTACAGAGCTGAATATGGTTCATCATCAAAATGCAACAACAAGATGAAGATGAGAGCTCCAATTAAAAACCCTACAAATGATGATCAAAGAGTCATCAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCACTTTGGCCTCATGCTGGAAACCAACAATCTGCAGACTAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA 576 43.92 MSSCINSPQEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQAANHSHNGSAADHYRAEYGSSSKCNNKMKMRAPIKNPTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNLQTKNDGSEKHLMSVPGLHY 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 66885807 66889915 + Hsped.08g25320.1 Hepe08g2532 578504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2532 191 CDD HMG-box_SF 119 155 - -
Hepe08g2532 191 FunFam axial regulator YABBY 5-like 103 161 - -
Hepe08g2532 191 SUPERFAMILY HMG-box 104 158 IPR036910 -
Hepe08g2532 191 Pfam YABBY protein 8 165 IPR006780 GO:0007275(InterPro)
Hepe08g2532 191 Gene3D High mobility group box domain 106 160 IPR036910 -
Hepe08g2532 191 PANTHER PROTEIN YABBY 6-RELATED 8 176 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2532 Hepe-Chr8:66885807 Hepe10g1628 Hepe-Chr10:53009522 5.36e-35 dispersed
Hepe08g0186 Hepe-Chr8:1664329 Hepe08g2532 Hepe-Chr8:66885807 8.68e-59 transposed
Hepe08g2532 Hepe-Chr8:66885807 Hepe09g0669 Hepe-Chr9:6330487 7.87e-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56281 PF04690 YABBY 1.90E-71 CL0114 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2532 K25796 - csv:101219877 372.859