Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2532 ATGTCAAGCTGCATCAACAGTCCACAGGAGCAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAATATGGCTGCTGCTTTCCAATCTCTCTCTTGGCAAAATTCTCAGGCAGCAAACCACAGCCACAATGGCAGTGCAGCTGATCACTACAGAGCTGAATATGGTTCATCATCAAAATGCAACAACAAGATGAAGATGAGAGCTCCAATTAAAAACCCTACAAATGATGATCAAAGAGTCATCAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCACTTTGGCCTCATGCTGGAAACCAACAATCTGCAGACTAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA 576 43.92 MSSCINSPQEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQAANHSHNGSAADHYRAEYGSSSKCNNKMKMRAPIKNPTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNLQTKNDGSEKHLMSVPGLHY 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 66885807 66889915 + Hsped.08g25320.1 Hepe08g2532 578504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2532 191 CDD HMG-box_SF 119 155 - -
Hepe08g2532 191 FunFam axial regulator YABBY 5-like 103 161 - -
Hepe08g2532 191 SUPERFAMILY HMG-box 104 158 IPR036910 -
Hepe08g2532 191 Pfam YABBY protein 8 165 IPR006780 GO:0007275(InterPro)
Hepe08g2532 191 Gene3D High mobility group box domain 106 160 IPR036910 -
Hepe08g2532 191 PANTHER PROTEIN YABBY 6-RELATED 8 176 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2532 K25796 - - csv:101219877 372.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2532 Hepe-Chr8:66885807 Hepe10g1628 Hepe-Chr10:53009522 5.36e-35 dispersed
Hepe08g0186 Hepe-Chr8:1664329 Hepe08g2532 Hepe-Chr8:66885807 8.68e-59 transposed
Hepe08g2532 Hepe-Chr8:66885807 Hepe09g0669 Hepe-Chr9:6330487 7.87e-89 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g1651 . 78 235 C2C2-YABBY Transcription Factor Family AT2G45190 60.5 1.3e-44 176.4
Hepe06g1154 . 71 225 C2C2-YABBY Transcription Factor Family AT2G45190 55.5 5.6e-40 161.0
Hepe08g0186 . 1 171 C2C2-YABBY Transcription Factor Family AT1G08465 64.4 1.5e-54 209.5
Hepe06g1651 . 34 225 C2C2-YABBY Transcription Factor Family AT1G08465 53.9 3.2e-44 175.3
Hepe06g1154 . 23 202 C2C2-YABBY Transcription Factor Family AT1G08465 54.4 1.7e-42 169.5
Hepe09g0669 . 5 182 C2C2-YABBY Transcription Factor Family AT1G08465 53.3 5.1e-42 167.9
Hepe06g1651 . 45 234 C2C2-YABBY Transcription Factor Family AT4G00180 55.3 1.8e-51 199.5
Hepe06g1154 . 33 223 C2C2-YABBY Transcription Factor Family AT4G00180 55.3 4.6e-47 184.9
Hepe10g1628 . 1 176 C2C2-YABBY Transcription Factor Family AT1G23420 50.3 2.0e-39 159.8
Hepe08g2532 . 10 170 C2C2-YABBY Transcription Factor Family AT2G26580 74.5 4.7e-63 237.7
Hepe09g0669 . 7 177 C2C2-YABBY Transcription Factor Family AT2G26580 70.8 6.1e-63 237.3
Hepe08g0186 . 1 172 C2C2-YABBY Transcription Factor Family AT2G26580 57.6 1.0e-46 183.3
Hepe06g1651 . 34 198 C2C2-YABBY Transcription Factor Family AT2G26580 54.1 3.7e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56281 PF04690 YABBY 1.90E-71 CL0114 Hepe TF