Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2535 ATGGTGCCATCAAAGAAGTTTAGAGGTGTTAGGCAACGACATTGGGGATCTTGGGTCTCTGAAATTCGCCACCCTCTTCTGAAGAGAAGGGTTTGGTTGGGGACGTTTGAGACGGCGGAGGAGGCGGCGAGAGCCTATGATCAGGCCGCCGTGTTAATGAGCGGCCGGAACGCGAAAACCAACTTTCCGATGAGCCAAACTGCGGCGGAATTAGAAAATATCACTTCTCCATCTTCTCCAAAGGGCTTATCGGAGATCCTCCACGCCAAGCTTCGAAAATGCAGCAAAGCGCCGTCGCCGTCGATGACGTGTCTCCGACTAGACACCGAAAATTCCCACATCGGCATTTGGCAGAAACGCGCCGGCCAACGCTCCGACTCCAGCTGGGTCATGACCGTTCATCTCGGAAAAAACAACTCTTCCTCTGCCGTCACCGCCGCCGCTGCCGGCGGCAATGACGACAGTGGGCGATTGCGGAATAATAATAATAATAATAATGGTTCGTTTTCGGGTTTGAGCTTGCAAGGTGGTGCTCCAATGGCGGCAGGTGGGCCCCACATGAGGAGCTTGCAAATGGATGAAGAAGAAAGAATTGCACTGCAAATGATTGAGGAGTTGCTGAGCAGAAATTATAGTAACTCATCTGAAATTCAAGTTCAAGATCAAGGGCAACCAAGTTTTTACCCTCTCTAA 693 51.08 MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQTAAELENITSPSSPKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGIWQKRAGQRSDSSWVMTVHLGKNNSSSAVTAAAAGGNDDSGRLRNNNNNNNGSFSGLSLQGGAPMAAGGPHMRSLQMDEEERIALQMIEELLSRNYSNSSEIQVQDQGQPSFYPL 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 66945677 66947065 + Hsped.08g25350.1 Hepe08g2535 578507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2535 230 MobiDBLite consensus disorder prediction 140 186 - -
Hepe08g2535 230 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g2535 230 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g2535 230 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g2535 230 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g2535 230 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g2535 230 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 151 IPR050913 -
Hepe08g2535 230 MobiDBLite consensus disorder prediction 155 173 - -
Hepe08g2535 230 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g2535 230 Pfam AP2 domain 6 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g2535 230 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
Hepe08g2535 230 FunFam Ethylene-responsive transcription factor 2 5 64 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2535 Hepe-Chr8:66945677 Hepe10g0226 Hepe-Chr10:2400040 1.65e-31 dispersed
Hepe01g2025 Hepe-Chr1:84978406 Hepe08g2535 Hepe-Chr8:66945677 1.37e-69 wgd
Hepe02g1370 Hepe-Chr2:17426347 Hepe08g2535 Hepe-Chr8:66945677 4.83e-55 wgd
Hepe08g2535 Hepe-Chr8:66945677 Hepe09g0678 Hepe-Chr9:6424384 3.52e-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56282 PF00847 AP2 3.20E-12 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2535 - - - 0.0