Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2554 ACAAGCAAACCACAAAACCACTGTTTTTCTCTCTTTTGTTTTTCCTCTGAGAAAACTAAAAACTCTTCTGCCATGGCAGCCATAGCCAGAGATGAGTCCGATTACGACAGCAGTTGCTCCTCCATAACCGTCCCGGACTCCAGCCGCAGCTGGATGAGCAACCTCAGCTTCGGTAGCCGCCGCCGCAGTAGCTCCGCCGAACACGGCAGCTCACCAGTCCAAAAGCCACACAAAGCAAACCAAGTAGCGTGGGAGGCGATGCGGTGGCTCCGGGGAGTGAAGGGGCGGGTCGGACTGGAGCACTTCCGGCTGCTACGGCGGCTCGGAAGTGGAGACATAGGGAATGTTTATCTGTGCCAAATAAGGAATCCGATGGTGGGTTTGCCGCAGTGCTTTTACGCGATGAAAGTGGTTGATAGAGAAGCGCTTTCGGTGAGGAATAAAGAGAGGAGGGCGGATATGGAGAAGGAGATATTGAAAGTGCTTGATCATCCATTTTTGCCCACGCTTTATGCGGAGTTTGAAGCTTCTCATTATTCTTGTTTGGTTATGGAGTTTTGTCCTGGTGGGGATTTGTACGCCGCTCGCCAACGCTTGCCCGGAAAACGATTTTCCATTTCTTCCGCTAAATTTTATGCAGCAGAGATAATTTTAGCCCTAGAGTATTTGCACATGATGGGCATAGTTTACAGAGATTTAAAGCCTGAAAACGTGCTGGTTAGAGAAGACGGCCACATCATGCTGTCGGATTTCGATCTCTGCCTCAAATGCGACGTCGTTCCAAAGCTCCTCCGTTCCCGGACCACCACCGAACGCCACGTCACAACCTCCTCCTCCGCCTGCGCCGCCGCCCCCATTCAGCCCGTCCTCTCCTGTTTCTCCCTCTCCCGCCGCCAAAAATCCACCACCGTCACCACCATCACCGAACACGCCACCTCCGCCTCCGTCGCATACGGCGGCGACACCGAATTCGACCCAGAGCCAGAATTAGTAGCGGAGCCAATAAACGCGAGATCAAAATCATTCGTGGGAACCCATGAATATTTGGCGCCGGAGGTGATTTCCGGTCAAGGCCACGGCAGCGCCGTCGACTGGTGGACATTGGGGATTTTCCTATACGAAATGTTGTACGGAAAAACTCCATTCAAAGGGGAAAACAACGAGAAAACGCTAATCAACATTTTGAAGCAGCCATTAACGTTTCCAAAATCTGGGTTTAGTTGCAGTAACATCAAAGAGTATGAAGAAATGGCGAAAGTTGAAGAATTAATCAAGAAACTTTTGGTGAAGAATCCGAAAAAAAGAATCGGAAGCTTAAAAGGTTCGGTTGAAATCAAAAGAGATGAGTTTTTCAAAGGGGTTAATTGGGCTTTAATCCGATCCGTACAACCTCCTCAAATCCCTAATTCCGAGATTAACAAATCTAATTACCCTTCTAATTATTACTTACCCAAATTCACCAAGAAACAAAGAGAACAACCCTACCAAATCCCTTCTCACCATTTTGATTACTTCTAA 1518 48.62 TSKPQNHCFSLFCFSSEKTKNSSAMAAIARDESDYDSSCSSITVPDSSRSWMSNLSFGSRRRSSSAEHGSSPVQKPHKANQVAWEAMRWLRGVKGRVGLEHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALSVRNKERRADMEKEILKVLDHPFLPTLYAEFEASHYSCLVMEFCPGGDLYAARQRLPGKRFSISSAKFYAAEIILALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLCLKCDVVPKLLRSRTTTERHVTTSSSACAAAPIQPVLSCFSLSRRQKSTTVTTITEHATSASVAYGGDTEFDPEPELVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGIFLYEMLYGKTPFKGENNEKTLINILKQPLTFPKSGFSCSNIKEYEEMAKVEELIKKLLVKNPKKRIGSLKGSVEIKRDEFFKGVNWALIRSVQPPQIPNSEINKSNYPSNYYLPKFTKKQREQPYQIPSHHFDYF 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 67162861 67165398 + Hsped.08g25540.1 Hepe08g2554 578526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2554 505 FunFam protein kinase PINOID 2 100 186 - -
Hepe08g2554 505 FunFam protein kinase PINOID 187 255 - -
Hepe08g2554 505 Gene3D Transferase(Phosphotransferase) domain 1 337 469 - -
Hepe08g2554 505 ProSiteProfiles AGC-kinase C-terminal domain profile. 452 505 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g2554 505 ProSiteProfiles Protein kinase domain profile. 102 451 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g2554 505 FunFam serine/threonine-protein kinase D6PK-like 337 469 - -
Hepe08g2554 505 CDD STKc_phototropin_like 101 468 - -
Hepe08g2554 505 Pfam Protein kinase domain 339 437 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g2554 505 Pfam Protein kinase domain 103 259 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g2554 505 Gene3D Transferase(Phosphotransferase) domain 1 187 256 - -
Hepe08g2554 505 PANTHER FLIPPASE KINASE 1-RELATED 37 487 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Hepe08g2554 505 SUPERFAMILY Protein kinase-like (PK-like) 80 488 IPR011009 -
Hepe08g2554 505 Gene3D Phosphorylase Kinase; domain 1 100 186 - -
Hepe08g2554 505 SMART serkin_6 102 451 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g2554 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0915 Hepe-Chr7:11928682 Hepe08g2554 Hepe-Chr8:67162861 4.99e-112 dispersed
Hepe07g1732 Hepe-Chr7:59423790 Hepe08g2554 Hepe-Chr8:67162861 6.08e-125 dispersed
Hepe08g0237 Hepe-Chr8:2119701 Hepe08g2554 Hepe-Chr8:67162861 1.07e-124 dispersed
Hepe08g0238 Hepe-Chr8:2139715 Hepe08g2554 Hepe-Chr8:67162861 1.93e-123 dispersed
Hepe08g0359 Hepe-Chr8:3219992 Hepe08g2554 Hepe-Chr8:67162861 1.22e-94 dispersed
Hepe08g0842 Hepe-Chr8:7607966 Hepe08g2554 Hepe-Chr8:67162861 6.62e-97 dispersed
Hepe08g2554 Hepe-Chr8:67162861 Hepe09g0786 Hepe-Chr9:7670562 3.32e-19 dispersed
Hepe08g2554 Hepe-Chr8:67162861 Hepe07g1432 Hepe-Chr7:47620532 3.47e-137 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73091 PF00069 Pkinase 3.40E-32 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2554 K08286 - csv:101202905 791.186