Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2577 ATGAAGAGCAATAATAATACCCATTTTTTGCTACTATTTTTCTTCTTCTTCTTCTTCTTCCTCCTCTCTTCAGCTGTTTCTGGAGAGCTTAGAATTTCCAGCCATGGTGGTGACCTCACAGACGCCGAAGCTCACTACATCCGTCAACGTCAGCTCCTTTCCTTCAGAGACGAATTCGGTGACCGCGGTGAGGAAGTCACCGTCGATCCCAATCTGGTTTTTGAAAACGACAGAATCAGAAATGCTTACATAGCATTACAAGCTTGGAAACAAGCGATTCTCTCCGACCCTTTGAATCTCACTCTCAATTGGGTTGGATCTAACGTTTGCAACTACCAAGGAATTTTCTGCGCTCCGGCGCCGGATAATTCCTCGCTCCGTACCGTCGCCGGAATCGACCTCAACCACGGCGACATTGCTGGGTACTTGCCGGAGGAGCTCGGTCTTCTCAAGGATCTTGCATTGTTCCATGTAAACTCGAATCGGTTCTGTGGGACTGTTCCTCACAAGTTTAAGAACTTGAAGATGTTGTTCGAGTTGGATCTGAGTAATAATCGCTTTGCCGGAAAGTTTCCTCGGGTGGTTCTTGAGCTGCCGGAGCTGAAGTTTTTGGATCTGAGGTTTAATGAGTTTGAAGGGACTGTTCCTAAGGAGCTTTTTGATAAGGATTTGGATGCGATTTTTATTAATCACAACAGATTCCGGTTTGACTTGCCGGAGAATTTCGGGAACTCGCCGGTTTCGGTGATTGTTCTTGCGAATAATAAATTTCATGGTTGTGTTCCGGGGAGTATTGGGAATATGACGAGATTGAATGAGATTATTCTGATGAATAATGGGTTTCGATCGTGTTTGCCGGCGGAGATTGGGTTGCTGAAGAATTTGACGGTGTTTGATGTGAGTTTTAATGAGTTCTTTGGGAGTTTGCCGGAGACGATCGGCGGAATGGTGAGTTTGGAGCAGCTGAATGTGGCGCATAATTTCTTGTCCGGGAAGATTCCGGAGAGTGTTTGTAAATTGCCGAATCTGCAGAACTTTACATATTCATATAATTTCTTTACGGGAGAGGCGCCGTCGTGCTTGGCGTTGCCGGATTTTGATGACCGGAGAAACTGTCTACCGGAGCGGCCGGTTCAGCGGTCTGATAGGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGATTGCAGTTCTTTTGGATGTCCTTCTTATGTTGCTCCGTCGCCACCTGTGGTGGTGCCATCTCCGCCACCTGTTGTTGTCCCTTCGCCGCCGCCACCTGTTTACGCTCCTCCTTCGCCACCTATTTCTGAATCACACCCCATTTACCGACCACGCCCTCCTCCGCCGCCGTCCCCCTCTCCCCCTCCGCCGCCTGTTTACTCTCCTCCCCCGCCTCCACCTTCCCCACCACCGCCCTCTCCCCCACCTCCACCACCGCCAGTTTACTCTCCACCACCACCTCCCCCATCTCCGCCACCGCCTTCACCACCACCACCTTCCCCACCACCGCCCTCACCCCCACCGCCACCCCCACCGGTTTACTCTCCACCCCCACCTCCACCATCACCACCACCACCATCTCCACCTCCGCCCTCACCCCCACCGCCGGTTTACTCTCCACCACCACCCCCACCTTCTCCTCCCCCACCGGCACCGGTGTATTGTATCCGACCATCACCACCACCGCCACCACCAAACTCTCCCCCACCTCCTCCTCCCTTGTTCTCTCCACCCCCACCTGTTTACTACTACAATTCCCCGCCACCGCCCAACTCTCCACCGCCACCGCCACCGCCCAACTCTCCACCACCCCCACCATTATACTCTCCTCCACCACCGCCCAACTCGCCTCCTCCTCCGCCAAATTCACCTCCCCCGCCAATCTATCCTTACTTATCTCCCCCACCTCCACCTGTCTATTCCCCACCACCACCAGTCTATTCCCCACCTCCACCGGTCTATTCACCGCCCCCACCACCGCCGTGTATAGAGCCTCCCCCACCTCCCCCACCGCCCTGTATAGAGTATTATGAACCCCCACCGCCACCATCCCCATCACCACCACCGCCCATCCAATACCTTCCTCCACCGTCTCCTTCACCCCCACCCCCACCACCACCCACCCCAGTTTACCATTCCCCACCACCGCCAGTGTACTACTCCCCACCACCACCACCATCACCATCACCGCCGCCACCGCCTGCATCCCCACCACCATCACCTGTATACGAAGGCCCATTGCCACCAATCTATGGAGTTTCGTACGCCTCTCCTCCACCTCCACCCTACTATTGA 2295 54.2 MKSNNNTHFLLLFFFFFFFFLLSSAVSGELRISSHGGDLTDAEAHYIRQRQLLSFRDEFGDRGEEVTVDPNLVFENDRIRNAYIALQAWKQAILSDPLNLTLNWVGSNVCNYQGIFCAPAPDNSSLRTVAGIDLNHGDIAGYLPEELGLLKDLALFHVNSNRFCGTVPHKFKNLKMLFELDLSNNRFAGKFPRVVLELPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFDLPENFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEIILMNNGFRSCLPAEIGLLKNLTVFDVSFNEFFGSLPETIGGMVSLEQLNVAHNFLSGKIPESVCKLPNLQNFTYSYNFFTGEAPSCLALPDFDDRRNCLPERPVQRSDRQCKSFLSKPVDCSSFGCPSYVAPSPPVVVPSPPPVVVPSPPPPVYAPPSPPISESHPIYRPRPPPPPSPSPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPSPPPPVYSPPPPPPSPPPPAPVYCIRPSPPPPPPNSPPPPPPLFSPPPPVYYYNSPPPPNSPPPPPPPNSPPPPPLYSPPPPPNSPPPPPNSPPPPIYPYLSPPPPPVYSPPPPVYSPPPPVYSPPPPPPCIEPPPPPPPPCIEYYEPPPPPSPSPPPPIQYLPPPSPSPPPPPPPTPVYHSPPPPVYYSPPPPPSPSPPPPPASPPPSPVYEGPLPPIYGVSYASPPPPPYY 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 67536518 67540591 + Hsped.08g25770.1 Hepe08g2577 578549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2577 764 MobiDBLite consensus disorder prediction 588 625 - -
Hepe08g2577 764 Gene3D Ribonuclease Inhibitor 83 243 IPR032675 -
Hepe08g2577 764 FunFam Leucine-rich repeat extensin-like protein 1 83 244 - -
Hepe08g2577 764 Pfam Leucine rich repeat N-terminal domain 85 117 IPR013210 -
Hepe08g2577 764 FunFam Leucine-rich repeat extensin-like protein 5 245 384 - -
Hepe08g2577 764 MobiDBLite consensus disorder prediction 722 743 - -
Hepe08g2577 764 SUPERFAMILY L domain-like 83 363 - -
Hepe08g2577 764 Pfam Leucine rich repeat 155 210 IPR001611 GO:0005515(InterPro)
Hepe08g2577 764 PRINTS Proline rich extensin signature 419 435 - -
Hepe08g2577 764 PRINTS Proline rich extensin signature 436 453 - -
Hepe08g2577 764 PRINTS Proline rich extensin signature 458 483 - -
Hepe08g2577 764 PRINTS Proline rich extensin signature 397 418 - -
Hepe08g2577 764 Pfam Leucine Rich Repeat 294 316 IPR001611 GO:0005515(InterPro)
Hepe08g2577 764 Pfam Leucine Rich Repeat 318 340 IPR001611 GO:0005515(InterPro)
Hepe08g2577 764 MobiDBLite consensus disorder prediction 681 708 - -
Hepe08g2577 764 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 520 IPR051582 -
Hepe08g2577 764 Gene3D Ribonuclease Inhibitor 244 372 IPR032675 -
Hepe08g2577 764 MobiDBLite consensus disorder prediction 431 549 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0572 Hepe-Chr3:11211999 Hepe08g2577 Hepe-Chr8:67536518 5.26e-37 dispersed
Hepe05g1580 Hepe-Chr5:65390959 Hepe08g2577 Hepe-Chr8:67536518 4.13e-36 dispersed
Hepe08g2577 Hepe-Chr8:67536518 Hepe09g0829 Hepe-Chr9:8117966 5.21e-21 dispersed
Hepe08g2577 Hepe-Chr8:67536518 Hepe09g0745 Hepe-Chr9:7134047 4.68e-72 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2577 - - - 0.0