Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2577 ATGAAGAGCAATAATAATACCCATTTTTTGCTACTATTTTTCTTCTTCTTCTTCTTCTTCCTCCTCTCTTCAGCTGTTTCTGGAGAGCTTAGAATTTCCAGCCATGGTGGTGACCTCACAGACGCCGAAGCTCACTACATCCGTCAACGTCAGCTCCTTTCCTTCAGAGACGAATTCGGTGACCGCGGTGAGGAAGTCACCGTCGATCCCAATCTGGTTTTTGAAAACGACAGAATCAGAAATGCTTACATAGCATTACAAGCTTGGAAACAAGCGATTCTCTCCGACCCTTTGAATCTCACTCTCAATTGGGTTGGATCTAACGTTTGCAACTACCAAGGAATTTTCTGCGCTCCGGCGCCGGATAATTCCTCGCTCCGTACCGTCGCCGGAATCGACCTCAACCACGGCGACATTGCTGGGTACTTGCCGGAGGAGCTCGGTCTTCTCAAGGATCTTGCATTGTTCCATGTAAACTCGAATCGGTTCTGTGGGACTGTTCCTCACAAGTTTAAGAACTTGAAGATGTTGTTCGAGTTGGATCTGAGTAATAATCGCTTTGCCGGAAAGTTTCCTCGGGTGGTTCTTGAGCTGCCGGAGCTGAAGTTTTTGGATCTGAGGTTTAATGAGTTTGAAGGGACTGTTCCTAAGGAGCTTTTTGATAAGGATTTGGATGCGATTTTTATTAATCACAACAGATTCCGGTTTGACTTGCCGGAGAATTTCGGGAACTCGCCGGTTTCGGTGATTGTTCTTGCGAATAATAAATTTCATGGTTGTGTTCCGGGGAGTATTGGGAATATGACGAGATTGAATGAGATTATTCTGATGAATAATGGGTTTCGATCGTGTTTGCCGGCGGAGATTGGGTTGCTGAAGAATTTGACGGTGTTTGATGTGAGTTTTAATGAGTTCTTTGGGAGTTTGCCGGAGACGATCGGCGGAATGGTGAGTTTGGAGCAGCTGAATGTGGCGCATAATTTCTTGTCCGGGAAGATTCCGGAGAGTGTTTGTAAATTGCCGAATCTGCAGAACTTTACATATTCATATAATTTCTTTACGGGAGAGGCGCCGTCGTGCTTGGCGTTGCCGGATTTTGATGACCGGAGAAACTGTCTACCGGAGCGGCCGGTTCAGCGGTCTGATAGGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGATTGCAGTTCTTTTGGATGTCCTTCTTATGTTGCTCCGTCGCCACCTGTGGTGGTGCCATCTCCGCCACCTGTTGTTGTCCCTTCGCCGCCGCCACCTGTTTACGCTCCTCCTTCGCCACCTATTTCTGAATCACACCCCATTTACCGACCACGCCCTCCTCCGCCGCCGTCCCCCTCTCCCCCTCCGCCGCCTGTTTACTCTCCTCCCCCGCCTCCACCTTCCCCACCACCGCCCTCTCCCCCACCTCCACCACCGCCAGTTTACTCTCCACCACCACCTCCCCCATCTCCGCCACCGCCTTCACCACCACCACCTTCCCCACCACCGCCCTCACCCCCACCGCCACCCCCACCGGTTTACTCTCCACCCCCACCTCCACCATCACCACCACCACCATCTCCACCTCCGCCCTCACCCCCACCGCCGGTTTACTCTCCACCACCACCCCCACCTTCTCCTCCCCCACCGGCACCGGTGTATTGTATCCGACCATCACCACCACCGCCACCACCAAACTCTCCCCCACCTCCTCCTCCCTTGTTCTCTCCACCCCCACCTGTTTACTACTACAATTCCCCGCCACCGCCCAACTCTCCACCGCCACCGCCACCGCCCAACTCTCCACCACCCCCACCATTATACTCTCCTCCACCACCGCCCAACTCGCCTCCTCCTCCGCCAAATTCACCTCCCCCGCCAATCTATCCTTACTTATCTCCCCCACCTCCACCTGTCTATTCCCCACCACCACCAGTCTATTCCCCACCTCCACCGGTCTATTCACCGCCCCCACCACCGCCGTGTATAGAGCCTCCCCCACCTCCCCCACCGCCCTGTATAGAGTATTATGAACCCCCACCGCCACCATCCCCATCACCACCACCGCCCATCCAATACCTTCCTCCACCGTCTCCTTCACCCCCACCCCCACCACCACCCACCCCAGTTTACCATTCCCCACCACCGCCAGTGTACTACTCCCCACCACCACCACCATCACCATCACCGCCGCCACCGCCTGCATCCCCACCACCATCACCTGTATACGAAGGCCCATTGCCACCAATCTATGGAGTTTCGTACGCCTCTCCTCCACCTCCACCCTACTATTGA 2295 54.2 MKSNNNTHFLLLFFFFFFFFLLSSAVSGELRISSHGGDLTDAEAHYIRQRQLLSFRDEFGDRGEEVTVDPNLVFENDRIRNAYIALQAWKQAILSDPLNLTLNWVGSNVCNYQGIFCAPAPDNSSLRTVAGIDLNHGDIAGYLPEELGLLKDLALFHVNSNRFCGTVPHKFKNLKMLFELDLSNNRFAGKFPRVVLELPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFDLPENFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEIILMNNGFRSCLPAEIGLLKNLTVFDVSFNEFFGSLPETIGGMVSLEQLNVAHNFLSGKIPESVCKLPNLQNFTYSYNFFTGEAPSCLALPDFDDRRNCLPERPVQRSDRQCKSFLSKPVDCSSFGCPSYVAPSPPVVVPSPPPVVVPSPPPPVYAPPSPPISESHPIYRPRPPPPPSPSPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPSPPPPVYSPPPPPPSPPPPAPVYCIRPSPPPPPPNSPPPPPPLFSPPPPVYYYNSPPPPNSPPPPPPPNSPPPPPLYSPPPPPNSPPPPPNSPPPPIYPYLSPPPPPVYSPPPPVYSPPPPVYSPPPPPPCIEPPPPPPPPCIEYYEPPPPPSPSPPPPIQYLPPPSPSPPPPPPPTPVYHSPPPPVYYSPPPPPSPSPPPPPASPPPSPVYEGPLPPIYGVSYASPPPPPYY 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 67536518 67540591 + Hsped.08g25770.1 Hepe08g2577 578549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2577 764 MobiDBLite consensus disorder prediction 588 625 - -
Hepe08g2577 764 Gene3D Ribonuclease Inhibitor 83 243 IPR032675 -
Hepe08g2577 764 FunFam Leucine-rich repeat extensin-like protein 1 83 244 - -
Hepe08g2577 764 Pfam Leucine rich repeat N-terminal domain 85 117 IPR013210 -
Hepe08g2577 764 FunFam Leucine-rich repeat extensin-like protein 5 245 384 - -
Hepe08g2577 764 MobiDBLite consensus disorder prediction 722 743 - -
Hepe08g2577 764 SUPERFAMILY L domain-like 83 363 - -
Hepe08g2577 764 Pfam Leucine rich repeat 155 210 IPR001611 GO:0005515(InterPro)
Hepe08g2577 764 PRINTS Proline rich extensin signature 419 435 - -
Hepe08g2577 764 PRINTS Proline rich extensin signature 436 453 - -
Hepe08g2577 764 PRINTS Proline rich extensin signature 458 483 - -
Hepe08g2577 764 PRINTS Proline rich extensin signature 397 418 - -
Hepe08g2577 764 Pfam Leucine Rich Repeat 294 316 IPR001611 GO:0005515(InterPro)
Hepe08g2577 764 Pfam Leucine Rich Repeat 318 340 IPR001611 GO:0005515(InterPro)
Hepe08g2577 764 MobiDBLite consensus disorder prediction 681 708 - -
Hepe08g2577 764 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 520 IPR051582 -
Hepe08g2577 764 Gene3D Ribonuclease Inhibitor 244 372 IPR032675 -
Hepe08g2577 764 MobiDBLite consensus disorder prediction 431 549 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2577 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0572 Hepe-Chr3:11211999 Hepe08g2577 Hepe-Chr8:67536518 5.26e-37 dispersed
Hepe05g1580 Hepe-Chr5:65390959 Hepe08g2577 Hepe-Chr8:67536518 4.13e-36 dispersed
Hepe08g2577 Hepe-Chr8:67536518 Hepe09g0829 Hepe-Chr9:8117966 5.21e-21 dispersed
Hepe08g2577 Hepe-Chr8:67536518 Hepe09g0745 Hepe-Chr9:7134047 4.68e-72 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0745 . 56 228 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 5.1e-43 173.3
Hepe02g0129 . 55 381 Leucine-rich Repeat extension Gene Families AT1G62440 57.2 7.2e-37 152.9
Hepe08g2577 . 64 233 Leucine-rich Repeat extension Gene Families AT1G62440 65.9 3.6e-36 150.6
Hepe09g0745 . 16 411 Leucine-rich Repeat extension Gene Families AT4G13340 73.0 1.3e-67 255.0
Hepe08g2577 . 30 415 Leucine-rich Repeat extension Gene Families AT4G13340 73.1 1.1e-63 241.9
Hepe01g1724 . 16 218 Leucine-rich Repeat extension Gene Families AT4G13340 69.3 1.5e-39 161.8
Hepe03g0572 . 20 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.3 2.2e-38 157.9
Hepe02g0129 . 54 382 Leucine-rich Repeat extension Gene Families AT4G13340 60.6 8.2e-38 156.0
Hepe05g1580 . 44 371 Leucine-rich Repeat extension Gene Families AT4G13340 65.3 2.0e-36 151.4
Hepe09g0745 . 19 410 Leucine-rich Repeat extension Gene Families AT3G24480 70.7 3.3e-72 269.6
Hepe08g2577 . 26 411 Leucine-rich Repeat extension Gene Families AT3G24480 71.1 7.2e-67 251.9
Hepe02g0129 . 54 382 Leucine-rich Repeat extension Gene Families AT3G24480 58.2 2.2e-39 160.6
Hepe01g1724 . 16 218 Leucine-rich Repeat extension Gene Families AT3G24480 64.1 3.7e-39 159.8
Hepe03g0572 . 24 225 Leucine-rich Repeat extension Gene Families AT3G24480 50.7 4.8e-39 159.5
Hepe05g1580 . 40 370 Leucine-rich Repeat extension Gene Families AT3G22800 68.4 8.1e-52 201.8
Hepe02g0129 . 54 381 Leucine-rich Repeat extension Gene Families AT3G22800 61.7 8.1e-44 175.3
Hepe09g0745 . 68 396 Leucine-rich Repeat extension Gene Families AT3G22800 61.0 1.3e-38 157.9
Hepe09g0745 . 42 400 Leucine-rich Repeat extension Gene Families AT5G25550 61.5 1.0e-40 164.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002074 1 2 0 2 2 2 4 2 2 2 2 2 2 2 2 3 2 4 4 2 2 2 2 2 2 2 2 3 2 1 64