Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2601 ATGGGGGAAGAAGATTCTGCCGGTGCGCCGCAGAAGAAGGCTCAATCAGATGGTGCAGCGTTGAGTAATTCTTCTTCATCGGATATTCCATCTAAGAAGCTCGCTAGACAGCTCGATTTCACCGGCTATGGAGGCGCCTCGCATCCTCAATCTCATTCCAACTCGCATTCACAGTCACAGGCTCCATTAGTTGCTCAGAATCTTCCTCAAGCTCAGCCGAAGCCACAGCCGCAGATGGTGGCGGCGTCGATCGCACCTTTGGCGCCTCATTCGTCAGTAAGAGCTGTGAAACCAGAATCACCAATGTCAAGAGCAAGACCTGCTGTTGAAACTAAAGACAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCGCGGTGTCTAAAATTGTATTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGCTGCAACTGCATAAATTGTTATAACAATGTTGAAAATGATGCTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAATCCAAATGCATTTCGACCAAAAATTGCAAGCAGTCCTCATGGAATGCGGGACAGCAGGGAGGAGGCGGGGGAGTTGCTGATGTTGCCTAAGCACAATAAGGGATGCCACTGCAAGAAGTCGGGTTGTCTAAAGAAATATTGTGAGTGTTTCCAGGCTAACATTCTCTGCTCGGATAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTTCATGGAGACCATGGTAACAACATAGCATTCATTCAACAGGCAGCTAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGCTATGCTTCACCTCCAGTATCCAAAAAAAGGAAAGGTCAAGAACTCTACTTTGGACCGACAGCCAAGGACCTATCCACTCATAGACCAGTGCCATTTCAACAGGCAAATCATATCAGAGCCACTGCTCCGCCGCTACCGTCCTTCCCCATTGCTGGTGTTGGAAGCCCCTCATTGTTGGGTCCTTCAAAGTTTACCTATAGGTCTCTAATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGCTCTGTTTTGGTGGTGCTGTCAAGTGAAGCTGCCAAGACATTTCAAGACCAAACAAATGCTACAGAGAAGCAATCTGATTGCCAGACAGAAACTTCTGTTGCATCATCCACTCAAGATAGATTGCAGAAAAAAGATGCATCTGATGAGAAAGCCGCAGCCGATGATCGTTCAAGTGCAAACCAGGCCGATAAAACCACCCCCGATGATTCCAATTCAGATGGTGGAGATGTGCCAAAGGGCGCTCCCATGTCTCCCGGAACTTTAGCTTTGATGTGTGATGAGCAAGATACAATTCTAATGGCTGCTGCTTCCCCCAATAGATTAACAGGTCCAGGCTGCAGCACCTCTTCACAACTGCCTCACAGACAAGACATGTCAGAGGTCTATGCAGAGCAGGAGAGGATCGTCCTAACAAAGTTTCGGGATTGTCTCAATAGACTCATCACTTTGGGAGAAATAAAAGAGACACAGTGTTCATCTTTAGCCAGAAGTGAAGTAGGTAATCAAGAACAACAATTTAACAATGGCACTACAAATTCTAGAACTGAAACTGAAACTCATTCGGCCCAACTCAACAATAAAGTTACGAAATCTTCGATTCCACCATCGGTGAAGACATCGCAGACAGTAACTGCAGCAGTCATGACCCTTAGCAACGATCAACGACAGAAAGTTTTGCCTCTGTCTTGA 1770 45.65 MGEEDSAGAPQKKAQSDGAALSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSNSHSQSQAPLVAQNLPQAQPKPQPQMVAASIAPLAPHSSVRAVKPESPMSRARPAVETKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDSREEAGELLMLPKHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFEGSEERQALFHGDHGNNIAFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGPTAKDLSTHRPVPFQQANHIRATAPPLPSFPIAGVGSPSLLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTFQDQTNATEKQSDCQTETSVASSTQDRLQKKDASDEKAAADDRSSANQADKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTILMAAASPNRLTGPGCSTSSQLPHRQDMSEVYAEQERIVLTKFRDCLNRLITLGEIKETQCSSLARSEVGNQEQQFNNGTTNSRTETETHSAQLNNKVTKSSIPPSVKTSQTVTAAVMTLSNDQRQKVLPLS 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 67850044 67855451 - Hsped.08g26010.1 Hepe08g2601 578573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2601 589 PANTHER TESMIN/TSO1-RELATED 31 518 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Hepe08g2601 589 MobiDBLite consensus disorder prediction 401 417 - -
Hepe08g2601 589 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 119 154 IPR005172 -
Hepe08g2601 589 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 205 239 IPR005172 -
Hepe08g2601 589 ProSiteProfiles CRC domain profile. 118 242 IPR005172 -
Hepe08g2601 589 MobiDBLite consensus disorder prediction 374 448 - -
Hepe08g2601 589 MobiDBLite consensus disorder prediction 1 79 - -
Hepe08g2601 589 MobiDBLite consensus disorder prediction 44 77 - -
Hepe08g2601 589 MobiDBLite consensus disorder prediction 16 32 - -
Hepe08g2601 589 MobiDBLite consensus disorder prediction 91 119 - -
Hepe08g2601 589 MobiDBLite consensus disorder prediction 418 432 - -
Hepe08g2601 589 SMART CXC_2 202 243 IPR033467 -
Hepe08g2601 589 SMART CXC_2 117 157 IPR033467 -
Hepe08g2601 589 MobiDBLite consensus disorder prediction 524 564 - -
Hepe08g2601 589 MobiDBLite consensus disorder prediction 374 400 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2601 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2601 Hepe-Chr8:67850044 Hepe10g0268 Hepe-Chr10:2771816 1.17e-16 dispersed
Hepe08g2601 Hepe-Chr8:67850044 Hepe09g0773 Hepe-Chr9:7455974 2.88e-206 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g2601 . 90 563 CPP Transcription Factor Family AT2G20110 58.0 1.7e-141 500.0
Hepe09g0773 . 26 504 CPP Transcription Factor Family AT2G20110 51.4 3.4e-126 449.1
Hepe08g2601 . 93 526 CPP Transcription Factor Family AT4G29000 63.7 8.3e-150 527.7
Hepe09g0773 . 25 508 CPP Transcription Factor Family AT4G29000 55.9 6.1e-145 511.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56287 PF03638 TCR 2.90E-12 No_clan Hepe TF