Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2602 ATGGAACCTCCACCGGCCAAGAGCTGGAGCATCCACACTCGGCCGGATATCATCCAGAAGTACCAGATCCTCGAGAGAGTCGGATCCGGCGCATATTCCGATGTCCACCGTGCGCGGCGGCTCTCCGACGACGTCATCGTCGCCTTGAAGGAGATCCACGATTATCAATCGGCGTTCCGAGAAATCGAGGCGCTCCAAATCCTTCAAGGTTTGCCTAATATCGTCGTTCTGCACGAGTACTTTTGGCGCGAGGATGAGGATGCGGTGCTTGTTCTCGAGTTTCTGAAGACGGATTTAGCCACCGTTATAGCGGAGGCGAAGAAGCGAGGATTCGACGGGGTGGAATCCGGGCGTGGGCTCGCGGTCGGGGAGGTTAAGCGGTGGATGATCCAGATTTTGAGTGGTCTTGATGCTTGTCATAGGAATTTGATCGTGCATAGGGATTTGAAACCTAGCAATTTGTTGATCTCCGATGATGGCGTGCTCAAGCTTGCCGATTTTGGACAGGCAAGGATACTCATGGAGCCTGAATATGTTGAATCAAATGAGATGAACTCTTCAGATCAAGTACTTGTTTCTCAGCCATCTGCAGTTTCTCCAGGAACGGAAAGCTCGGTTCAAGAAGGTAACCGAACTGAAGAGCAAGAACCAATTAGCAAAGAGGAGTATTTTCGAGTTTTAGACGAGCTGAAAGCAAAAAATTCAGCAAAAAAATCAGTAAATGAATCTGAGAAGGAAACATGTACTTATGATGGAGATACATCTTGCTTAGCAACATGTACCACGAGTGACCTTGAAGATGATCCATTTAAAGGTTCATCATATTGTTATGAAATAGAAGGGGGAGTTCCAGCAGATGATGGACAAGGTTCTCTCACTTCATGTGTCGGTACTCGCTGGTTCAGGGCCCCCGAATTACTCTATGGCTCTACAAACTACGGTTTGGAGATCGACTTATGGTCATTGGGCTGCATTTTTGCAGAACTTTTTACATTGGAACCCCTTTTTCCAGGAACTGCTGACATTGATCAAATGAGCAGAATTTTCACTACTCTTGGCAACTTGACTGAAGATTCCTGGCCAGGTTGTTCCAACCTTCCTGATTTTCAAATTATATCATTCAACACAATCGAAAAGCCAGTCGGTCTAGAAGCAAGTCTTCCCAACTGTTCTCCTAATGAAATTTCAATCGTTGAAAGACTTCTTTGTTACGACCCGGCTAATCGAGCGACTGCTACAGAATTGCTACAAGACAAGTATTTCACTGATGAGCCACTTCCTATTCCCATGTCTGAGCTTCATGTTCCTTCAACCAGAAGTGGACAGGATGTGGATTCTCCCACAGGATGGTACCTCGAAGAGTCAGATTCCGATATGGACGAACTCGGCCCCGTGAACGTTACCACTAATGCCACTGGTTATTCCATACAATTTGATTGA 1440 46.46 MEPPPAKSWSIHTRPDIIQKYQILERVGSGAYSDVHRARRLSDDVIVALKEIHDYQSAFREIEALQILQGLPNIVVLHEYFWREDEDAVLVLEFLKTDLATVIAEAKKRGFDGVESGRGLAVGEVKRWMIQILSGLDACHRNLIVHRDLKPSNLLISDDGVLKLADFGQARILMEPEYVESNEMNSSDQVLVSQPSAVSPGTESSVQEGNRTEEQEPISKEEYFRVLDELKAKNSAKKSVNESEKETCTYDGDTSCLATCTTSDLEDDPFKGSSYCYEIEGGVPADDGQGSLTSCVGTRWFRAPELLYGSTNYGLEIDLWSLGCIFAELFTLEPLFPGTADIDQMSRIFTTLGNLTEDSWPGCSNLPDFQIISFNTIEKPVGLEASLPNCSPNEISIVERLLCYDPANRATATELLQDKYFTDEPLPIPMSELHVPSTRSGQDVDSPTGWYLEESDSDMDELGPVNVTTNATGYSIQFD 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 67857320 67860252 - Hsped.08g26020.1 Hepe08g2602 578574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2602 479 PANTHER CELL DIVISION PROTEIN KINASE 20 421 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0019912(PANTHER)
Hepe08g2602 479 MobiDBLite consensus disorder prediction 184 217 - -
Hepe08g2602 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g2602 479 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524(InterPro)
Hepe08g2602 479 ProSiteProfiles Protein kinase domain profile. 21 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g2602 479 FunFam Cyclin-dependent kinase F-1 12 106 - -
Hepe08g2602 479 Pfam Protein kinase domain 21 178 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g2602 479 Pfam Protein kinase domain 290 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g2602 479 MobiDBLite consensus disorder prediction 184 208 - -
Hepe08g2602 479 Gene3D Phosphorylase Kinase; domain 1 13 110 - -
Hepe08g2602 479 Gene3D Transferase(Phosphotransferase) domain 1 262 431 - -
Hepe08g2602 479 Gene3D Transferase(Phosphotransferase) domain 1 114 253 - -
Hepe08g2602 479 SUPERFAMILY Protein kinase-like (PK-like) 7 439 IPR011009 -
Hepe08g2602 479 SMART serkin_6 21 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2602 Hepe-Chr8:67857320 Hepe07g2089 Hepe-Chr7:65183008 1.33e-36 dispersed
Hepe08g2602 Hepe-Chr8:67857320 Hepe07g1035 Hepe-Chr7:14915394 2.00e-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73094 PF00069 Pkinase 1.80E-30 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2602 - - - 0.0