Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2612 ATGGCCGACGCCACCGTGCCGGACACCGACTCGGGTGGCTCTAATTCATCATCATCGTCGCCCTCGTGTTCCATCTCGTCTCCACCAAAACAAGGTGGCGCCCGAGCAAAGCGCGGTCGCGAAATTAACAACAACAGCAACAACAACGACAGTCGACACCCAATTTATCGCGGCGTTCGAATGAGGGCATGGGGCAAATGGGTGTCGGAAATTCGAGAACCGAAGAAGAAGAGTCGGATCTGGCTCGGCACCTTCGCCACGCCCGACATGGCGGCGCGTGCTCACGACGTCGCGGCCTTGACCATCAAAGGCAACTCCGCCATCCTCAATTTTCCCGAACTCGCTGCCTCATTCCCCCGCCCCGCCTCCTCCTCCCCCCGCGACGTCCAATCCGCTGCCGCCCTAGCTGCCTCAATGCAACTCCCTAACACCCCTCCTCCGCCACCACTGCCTGCTCCGCCGTCGCCGCTGTTTTCGTCTTCTTCGGAGTTGGATGAGTCGACGCCGGAGGAATTGAGTGAAATAGTGGAGCTGCCGAGTTTGGGGACAAGTTACGAGGAATCGGCCGAGTCGATGACCGAGTTCGTGTGCGACGAGTGGCTGTATAGTTATGGACCGTCATGGTATCAAAATCAAAGCGGAAATGAAGAAGAAGAAGAAGGTTATGAGTACTTTAGAGATCAAATGGCAATGGCGGAAACAGATCAGTGTGTGATTCCCGCTGCATTTCAACCTTTACCTTTCTCGTGGTAA 753 56.04 MADATVPDTDSGGSNSSSSSPSCSISSPPKQGGARAKRGREINNNSNNNDSRHPIYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASFPRPASSSPRDVQSAAALAASMQLPNTPPPPPLPAPPSPLFSSSSELDESTPEELSEIVELPSLGTSYEESAESMTEFVCDEWLYSYGPSWYQNQSGNEEEEEGYEYFRDQMAMAETDQCVIPAAFQPLPFSW 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 68003145 68003897 + Hsped.08g26120.1 Hepe08g2612 578584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2612 250 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677(InterPro)
Hepe08g2612 250 FunFam Ethylene-responsive transcription factor 2 54 113 - -
Hepe08g2612 250 Pfam AP2 domain 55 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g2612 250 CDD AP2 54 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g2612 250 SMART rav1_2 55 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g2612 250 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 31 197 IPR051032 -
Hepe08g2612 250 MobiDBLite consensus disorder prediction 139 173 - -
Hepe08g2612 250 MobiDBLite consensus disorder prediction 1 54 - -
Hepe08g2612 250 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g2612 250 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g2612 250 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g2612 250 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g2612 250 MobiDBLite consensus disorder prediction 8 29 - -
Hepe08g2612 250 MobiDBLite consensus disorder prediction 141 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2275 Hepe-Chr1:87340059 Hepe08g2612 Hepe-Chr8:68003145 3.22e-23 dispersed
Hepe03g1526 Hepe-Chr3:72132703 Hepe08g2612 Hepe-Chr8:68003145 1.09e-41 dispersed
Hepe08g2612 Hepe-Chr8:68003145 Hepe10g0364 Hepe-Chr10:3964166 1.51e-45 dispersed
Hepe06g1118 Hepe-Chr6:59915307 Hepe08g2612 Hepe-Chr8:68003145 9.50e-44 transposed
Hepe02g1438 Hepe-Chr2:18336072 Hepe08g2612 Hepe-Chr8:68003145 1.49e-41 wgd
Hepe08g2612 Hepe-Chr8:68003145 Hepe09g0797 Hepe-Chr9:7758930 2.37e-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56288 PF00847 AP2 1.30E-12 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2612 K09286 - csv:101212945 296.589