Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe08g2612 | ATGGCCGACGCCACCGTGCCGGACACCGACTCGGGTGGCTCTAATTCATCATCATCGTCGCCCTCGTGTTCCATCTCGTCTCCACCAAAACAAGGTGGCGCCCGAGCAAAGCGCGGTCGCGAAATTAACAACAACAGCAACAACAACGACAGTCGACACCCAATTTATCGCGGCGTTCGAATGAGGGCATGGGGCAAATGGGTGTCGGAAATTCGAGAACCGAAGAAGAAGAGTCGGATCTGGCTCGGCACCTTCGCCACGCCCGACATGGCGGCGCGTGCTCACGACGTCGCGGCCTTGACCATCAAAGGCAACTCCGCCATCCTCAATTTTCCCGAACTCGCTGCCTCATTCCCCCGCCCCGCCTCCTCCTCCCCCCGCGACGTCCAATCCGCTGCCGCCCTAGCTGCCTCAATGCAACTCCCTAACACCCCTCCTCCGCCACCACTGCCTGCTCCGCCGTCGCCGCTGTTTTCGTCTTCTTCGGAGTTGGATGAGTCGACGCCGGAGGAATTGAGTGAAATAGTGGAGCTGCCGAGTTTGGGGACAAGTTACGAGGAATCGGCCGAGTCGATGACCGAGTTCGTGTGCGACGAGTGGCTGTATAGTTATGGACCGTCATGGTATCAAAATCAAAGCGGAAATGAAGAAGAAGAAGAAGGTTATGAGTACTTTAGAGATCAAATGGCAATGGCGGAAACAGATCAGTGTGTGATTCCCGCTGCATTTCAACCTTTACCTTTCTCGTGGTAA | 753 | 56.04 | MADATVPDTDSGGSNSSSSSPSCSISSPPKQGGARAKRGREINNNSNNNDSRHPIYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASFPRPASSSPRDVQSAAALAASMQLPNTPPPPPLPAPPSPLFSSSSELDESTPEELSEIVELPSLGTSYEESAESMTEFVCDEWLYSYGPSWYQNQSGNEEEEEGYEYFRDQMAMAETDQCVIPAAFQPLPFSW | 250 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 68003145 | 68003897 | + | Hsped.08g26120.1 | Hepe08g2612 | 578584 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe08g2612 | 250 | SUPERFAMILY | DNA-binding domain | 55 | 113 | IPR016177 | GO:0003677(InterPro) | |
Hepe08g2612 | 250 | FunFam | Ethylene-responsive transcription factor 2 | 54 | 113 | - | - | |
Hepe08g2612 | 250 | Pfam | AP2 domain | 55 | 104 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g2612 | 250 | CDD | AP2 | 54 | 114 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g2612 | 250 | SMART | rav1_2 | 55 | 118 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g2612 | 250 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 31 | 197 | IPR051032 | - | |
Hepe08g2612 | 250 | MobiDBLite | consensus disorder prediction | 139 | 173 | - | - | |
Hepe08g2612 | 250 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
Hepe08g2612 | 250 | ProSiteProfiles | AP2/ERF domain profile. | 55 | 112 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g2612 | 250 | PRINTS | Ethylene responsive element binding protein signature | 56 | 67 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g2612 | 250 | PRINTS | Ethylene responsive element binding protein signature | 78 | 94 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g2612 | 250 | Gene3D | AP2/ERF domain | 55 | 113 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g2612 | 250 | MobiDBLite | consensus disorder prediction | 8 | 29 | - | - | |
Hepe08g2612 | 250 | MobiDBLite | consensus disorder prediction | 141 | 156 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe01g2275 | Hepe-Chr1:87340059 | Hepe08g2612 | Hepe-Chr8:68003145 | 3.22e-23 | dispersed | |
Hepe03g1526 | Hepe-Chr3:72132703 | Hepe08g2612 | Hepe-Chr8:68003145 | 1.09e-41 | dispersed | |
Hepe08g2612 | Hepe-Chr8:68003145 | Hepe10g0364 | Hepe-Chr10:3964166 | 1.51e-45 | dispersed | |
Hepe06g1118 | Hepe-Chr6:59915307 | Hepe08g2612 | Hepe-Chr8:68003145 | 9.50e-44 | transposed | |
Hepe02g1438 | Hepe-Chr2:18336072 | Hepe08g2612 | Hepe-Chr8:68003145 | 1.49e-41 | wgd | |
Hepe08g2612 | Hepe-Chr8:68003145 | Hepe09g0797 | Hepe-Chr9:7758930 | 2.37e-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56288 | PF00847 | AP2 | 1.30E-12 | CL0081 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe08g2612 | K09286 | - | csv:101212945 | 296.589 |