Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2630 ATGAAGACCAAGACGCCATTGAAGCAGCTCAAACTCTCCGTTCCCGCTCAAGAAACTTCTATCCGTTCTTTCCTAACTGCAAGTGGAACGTTTCACGACGGCAATCTGCTACTGAACCAGAAAGGATTGCGTCTTATATCCGAAGAGAAAGAAGTGCAGACTTCAGATTGTAAGGAGCTGGATGTCGATTTCTCATTGGAAGATCTAGAGACTGTGAAAGTCATCGGAAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGTCACAAATGGGTTGGAAAACTTTTTGCCTTGAAGGTCATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTGCAGGAACTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCATAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCCGATGTAGTCAGACATGTCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGGGAGGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAGAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAGCGAATTAGCGGAGGAACATATGATTACAGCAGTGATATATGGAGCTTGGGCCTGGTAGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGCTGGCCAAGCTTTTATGAACTTTTAGAAGCAATTGTATCAAAGCCACCGCCTATTGCTCCACCAGATCAATTTTCTCCCGAGTTCTGTTCATTCGTATCTGCTTGCATTAAGAAGGACCCTAAAGAAAGATCATCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATCGATCTCGGGATTCTCGTGGGCAGCTTGGATCCTCCTGTAAGTTTTCCTAGATAA 1065 41.5 MKTKTPLKQLKLSVPAQETSIRSFLTASGTFHDGNLLLNQKGLRLISEEKEVQTSDCKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRHVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVSKPPPIAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDLGILVGSLDPPVSFPR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 68262406 68266089 - Hsped.08g26300.1 Hepe08g2630 578602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2630 354 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g2630 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g2630 354 SUPERFAMILY Protein kinase-like (PK-like) 67 339 IPR011009 -
Hepe08g2630 354 SMART serkin_6 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g2630 354 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Hepe08g2630 354 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g2630 354 FunFam Mitogen-activated protein kinase kinase 6 150 348 - -
Hepe08g2630 354 Gene3D Transferase(Phosphotransferase) domain 1 150 343 - -
Hepe08g2630 354 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Hepe08g2630 354 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 24 341 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Hepe08g2630 354 CDD PKc_MAPKK_plant_like 67 333 - -
Hepe08g2630 354 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1784 Hepe-Chr2:25901475 Hepe08g2630 Hepe-Chr8:68262406 7.82e-77 dispersed
Hepe07g2336 Hepe-Chr7:67729766 Hepe08g2630 Hepe-Chr8:68262406 1.27e-66 dispersed
Hepe08g2630 Hepe-Chr8:68262406 Hepe09g0895 Hepe-Chr9:8971228 2.95e-157 dispersed
Hepe08g2630 Hepe-Chr8:68262406 Hepe08g2677 Hepe-Chr8:68806504 2.47e-143 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73096 PF00069 Pkinase 3.70E-66 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2630 K04368 - csv:101218848 683.33