Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2630 ATGAAGACCAAGACGCCATTGAAGCAGCTCAAACTCTCCGTTCCCGCTCAAGAAACTTCTATCCGTTCTTTCCTAACTGCAAGTGGAACGTTTCACGACGGCAATCTGCTACTGAACCAGAAAGGATTGCGTCTTATATCCGAAGAGAAAGAAGTGCAGACTTCAGATTGTAAGGAGCTGGATGTCGATTTCTCATTGGAAGATCTAGAGACTGTGAAAGTCATCGGAAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGTCACAAATGGGTTGGAAAACTTTTTGCCTTGAAGGTCATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTGCAGGAACTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCATAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCCGATGTAGTCAGACATGTCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGGGAGGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAGAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAGCGAATTAGCGGAGGAACATATGATTACAGCAGTGATATATGGAGCTTGGGCCTGGTAGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGCTGGCCAAGCTTTTATGAACTTTTAGAAGCAATTGTATCAAAGCCACCGCCTATTGCTCCACCAGATCAATTTTCTCCCGAGTTCTGTTCATTCGTATCTGCTTGCATTAAGAAGGACCCTAAAGAAAGATCATCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATCGATCTCGGGATTCTCGTGGGCAGCTTGGATCCTCCTGTAAGTTTTCCTAGATAA 1065 41.5 MKTKTPLKQLKLSVPAQETSIRSFLTASGTFHDGNLLLNQKGLRLISEEKEVQTSDCKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRHVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVSKPPPIAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDLGILVGSLDPPVSFPR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 68262406 68266089 - Hsped.08g26300.1 Hepe08g2630 578602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2630 354 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g2630 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g2630 354 SUPERFAMILY Protein kinase-like (PK-like) 67 339 IPR011009 -
Hepe08g2630 354 SMART serkin_6 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g2630 354 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Hepe08g2630 354 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g2630 354 FunFam Mitogen-activated protein kinase kinase 6 150 348 - -
Hepe08g2630 354 Gene3D Transferase(Phosphotransferase) domain 1 150 343 - -
Hepe08g2630 354 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Hepe08g2630 354 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 24 341 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Hepe08g2630 354 CDD PKc_MAPKK_plant_like 67 333 - -
Hepe08g2630 354 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2630 K04368 - - csv:101218848 683.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1784 Hepe-Chr2:25901475 Hepe08g2630 Hepe-Chr8:68262406 7.82e-77 dispersed
Hepe07g2336 Hepe-Chr7:67729766 Hepe08g2630 Hepe-Chr8:68262406 1.27e-66 dispersed
Hepe08g2630 Hepe-Chr8:68262406 Hepe09g0895 Hepe-Chr9:8971228 2.95e-157 dispersed
Hepe08g2630 Hepe-Chr8:68262406 Hepe08g2677 Hepe-Chr8:68806504 2.47e-143 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0895 . 30 355 MAP Kinase Kinase Gene Family AT4G26070 69.9 3.3e-135 478.4
Hepe08g2677 . 48 372 MAP Kinase Kinase Gene Family AT4G26070 66.3 4.0e-125 444.9
Hepe08g2630 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.9 2.0e-108 389.4
Hepe09g0895 . 1 328 MAP Kinase Kinase Gene Family AT4G29810 67.4 3.7e-131 464.9
Hepe08g2677 . 22 346 MAP Kinase Kinase Gene Family AT4G29810 61.6 1.8e-114 409.5
Hepe08g2630 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 60.0 1.6e-110 396.4
Hepe02g1784 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.3 1.4e-227 785.8
Hepe02g1587 . 1 375 MAP Kinase Kinase Gene Family AT1G51660 66.3 2.4e-128 455.7
Hepe07g2336 . 5 322 MAP Kinase Kinase Gene Family AT1G51660 52.0 2.8e-84 309.3
Hepe02g1587 . 1 375 MAP Kinase Kinase Gene Family AT3G21220 67.0 1.9e-130 462.6
Hepe07g2336 . 49 318 MAP Kinase Kinase Gene Family AT3G21220 54.8 6.6e-83 304.7
Hepe08g2630 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 84.2 3.8e-171 597.8
Hepe09g0895 . 14 354 MAP Kinase Kinase Gene Family AT5G56580 59.6 4.9e-118 421.4
Hepe08g2677 . 32 361 MAP Kinase Kinase Gene Family AT5G56580 56.3 1.5e-106 383.3
Hepe07g2336 . 1 316 MAP Kinase Kinase Gene Family AT1G18350 63.1 4.4e-107 384.8
Hepe07g2336 . 1 304 MAP Kinase Kinase Gene Family AT3G06230 51.0 3.7e-79 292.0
Hepe07g2336 . 1 316 MAP Kinase Kinase Gene Family AT1G73500 64.5 3.9e-111 398.3
Hepe02g1587 . 84 343 MAP Kinase Kinase Gene Family AT1G73500 52.5 2.2e-77 286.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007196 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73096 PF00069 Pkinase 3.70E-66 CL0016 Hepe PK