Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe08g2641 | ATGATAATCGGCGATCAGCTCAACCGCCGGAATCCGACGGTTCACATTCCTCCGTGGACGTGTCTGGAGGATTCGGCGTCGGATGTGTACAGTCATTCGCCGGGGAGCGGCGGCAGCGGCTCTGTCAAGTGCGATGGATACTCTCCTTATTATCTACAGGATGCATTGGCGATGCTGCAGCGGTACTCGCCTTTGAATGAGACGGAGATGGACGCGGATTTTGATGTTTCAGGCCGGGAAATGGATTCTCCGGTGGATACGTACTCCTCCGATCAGTTTCGAATGTATGAGTTCAAGATTAAGAAGTGTTCGCGAGGAAGATCGCACGACTGGACTGAGTGTCCGTTTGCTCATCCCGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAGGTATTACTATTCCGGTACGGCGTGTGCGGATTTTCGGAAAGGTAGCTGTAAGAAAGGAGATTCGTGTGAGTTTGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGTTATCGGACTCAGCCATGCAAGGATGGGACGAGTTGCCGGAGGAGAGTTTGTTTTTTCGCTCATACGGCGGAGCAACTTAGGGTTTTGCCTCAGCAAAGTCCTCGGAGTACGAATTCCTTCCCTTCGTACGACGGATCGCCTCTACGGCAAGCAATTGAAGCCTGTGCGAAACAACTGCCGTATTTATCTTCTCCAGGTACATCGCCGCCGATATCTCCTCGAATCGATTCTCCACCTCAATCGCCGATGATTAAATCACTAAATCGACCACACGGAACAAGTTCGATCAACGAAATGGTTGCGTCACTGCGAAGTTTACAGCTCAACAAGGAACTCAGTAAGGTGCAATCGCCTTCTTCGTCGTGGAATGTTCAAGTCGGTTCTCCTGTATTCGGATCTCCAAAGGAATCCCCCTCCGGATCCGGTTTCGGTAGCCTTCCAGATACTCCGACTCGTCAAGGTGTCCGATATCTCGATTTCTGGGATCTAGGTTGCGAAGAGGAACCGGCGATGGAGCGAGTGGAGTCCGGGAGAAATCTACGGGCAAAAATGCTGGAGAAATTAAGGAAGGAGAACTCCGTCGGCTGCGGCGATCAGGACAAATACGGCGGCGGAAGCGGCGGTGGAGGAGTGGACGTCGGTTGGATCTCGGAGCTGCTCAAGTAA | 1167 | 52.87 | MIIGDQLNRRNPTVHIPPWTCLEDSASDVYSHSPGSGGSGSVKCDGYSPYYLQDALAMLQRYSPLNETEMDADFDVSGREMDSPVDTYSSDQFRMYEFKIKKCSRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTAEQLRVLPQQSPRSTNSFPSYDGSPLRQAIEACAKQLPYLSSPGTSPPISPRIDSPPQSPMIKSLNRPHGTSSINEMVASLRSLQLNKELSKVQSPSSSWNVQVGSPVFGSPKESPSGSGFGSLPDTPTRQGVRYLDFWDLGCEEEPAMERVESGRNLRAKMLEKLRKENSVGCGDQDKYGGGSGGGGVDVGWISELLK | 388 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 68409621 | 68411138 | + | Hsped.08g26410.1 | Hepe08g2641 | 578613 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe08g2641 | 388 | MobiDBLite | consensus disorder prediction | 360 | 388 | - | - | |
Hepe08g2641 | 388 | SUPERFAMILY | CCCH zinc finger | 131 | 161 | IPR036855 | GO:0046872(InterPro) | |
Hepe08g2641 | 388 | ProSiteProfiles | Zinc finger C3H1-type profile. | 132 | 159 | IPR000571 | GO:0046872(InterPro) | |
Hepe08g2641 | 388 | MobiDBLite | consensus disorder prediction | 284 | 315 | - | - | |
Hepe08g2641 | 388 | PANTHER | UNKEMPT FAMILY MEMBER | 36 | 388 | IPR045234 | - | |
Hepe08g2641 | 388 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 136 | 157 | IPR000571 | GO:0046872(InterPro) | |
Hepe08g2641 | 388 | FunFam | Zinc finger CCCH domain-containing protein 66 | 90 | 158 | - | - | |
Hepe08g2641 | 388 | Gene3D | - | 133 | 196 | - | - | |
Hepe08g2641 | 388 | SMART | c3hfinal6 | 167 | 190 | IPR000571 | GO:0046872(InterPro) | |
Hepe08g2641 | 388 | SMART | c3hfinal6 | 132 | 158 | IPR000571 | GO:0046872(InterPro) | |
Hepe08g2641 | 388 | MobiDBLite | consensus disorder prediction | 284 | 317 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe01g1861 | Hepe-Chr1:83561963 | Hepe08g2641 | Hepe-Chr8:68409621 | 1.07e-112 | dispersed | |
Hepe02g0123 | Hepe-Chr2:1418342 | Hepe08g2641 | Hepe-Chr8:68409621 | 2.28e-62 | dispersed | |
Hepe07g0289 | Hepe-Chr7:2924467 | Hepe08g2641 | Hepe-Chr8:68409621 | 1.16e-54 | dispersed | |
Hepe08g1370 | Hepe-Chr8:16076543 | Hepe08g2641 | Hepe-Chr8:68409621 | 1.98e-67 | dispersed | |
Hepe08g2641 | Hepe-Chr8:68409621 | Hepe09g0842 | Hepe-Chr9:8293413 | 1.70e-160 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56290 | PF00642 | zf-CCCH | 7.40E-06 | CL0537 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe08g2641 | - | - | - | 0.0 |