Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2641 ATGATAATCGGCGATCAGCTCAACCGCCGGAATCCGACGGTTCACATTCCTCCGTGGACGTGTCTGGAGGATTCGGCGTCGGATGTGTACAGTCATTCGCCGGGGAGCGGCGGCAGCGGCTCTGTCAAGTGCGATGGATACTCTCCTTATTATCTACAGGATGCATTGGCGATGCTGCAGCGGTACTCGCCTTTGAATGAGACGGAGATGGACGCGGATTTTGATGTTTCAGGCCGGGAAATGGATTCTCCGGTGGATACGTACTCCTCCGATCAGTTTCGAATGTATGAGTTCAAGATTAAGAAGTGTTCGCGAGGAAGATCGCACGACTGGACTGAGTGTCCGTTTGCTCATCCCGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAGGTATTACTATTCCGGTACGGCGTGTGCGGATTTTCGGAAAGGTAGCTGTAAGAAAGGAGATTCGTGTGAGTTTGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGTTATCGGACTCAGCCATGCAAGGATGGGACGAGTTGCCGGAGGAGAGTTTGTTTTTTCGCTCATACGGCGGAGCAACTTAGGGTTTTGCCTCAGCAAAGTCCTCGGAGTACGAATTCCTTCCCTTCGTACGACGGATCGCCTCTACGGCAAGCAATTGAAGCCTGTGCGAAACAACTGCCGTATTTATCTTCTCCAGGTACATCGCCGCCGATATCTCCTCGAATCGATTCTCCACCTCAATCGCCGATGATTAAATCACTAAATCGACCACACGGAACAAGTTCGATCAACGAAATGGTTGCGTCACTGCGAAGTTTACAGCTCAACAAGGAACTCAGTAAGGTGCAATCGCCTTCTTCGTCGTGGAATGTTCAAGTCGGTTCTCCTGTATTCGGATCTCCAAAGGAATCCCCCTCCGGATCCGGTTTCGGTAGCCTTCCAGATACTCCGACTCGTCAAGGTGTCCGATATCTCGATTTCTGGGATCTAGGTTGCGAAGAGGAACCGGCGATGGAGCGAGTGGAGTCCGGGAGAAATCTACGGGCAAAAATGCTGGAGAAATTAAGGAAGGAGAACTCCGTCGGCTGCGGCGATCAGGACAAATACGGCGGCGGAAGCGGCGGTGGAGGAGTGGACGTCGGTTGGATCTCGGAGCTGCTCAAGTAA 1167 52.87 MIIGDQLNRRNPTVHIPPWTCLEDSASDVYSHSPGSGGSGSVKCDGYSPYYLQDALAMLQRYSPLNETEMDADFDVSGREMDSPVDTYSSDQFRMYEFKIKKCSRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTAEQLRVLPQQSPRSTNSFPSYDGSPLRQAIEACAKQLPYLSSPGTSPPISPRIDSPPQSPMIKSLNRPHGTSSINEMVASLRSLQLNKELSKVQSPSSSWNVQVGSPVFGSPKESPSGSGFGSLPDTPTRQGVRYLDFWDLGCEEEPAMERVESGRNLRAKMLEKLRKENSVGCGDQDKYGGGSGGGGVDVGWISELLK 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 68409621 68411138 + Hsped.08g26410.1 Hepe08g2641 578613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2641 388 MobiDBLite consensus disorder prediction 360 388 - -
Hepe08g2641 388 SUPERFAMILY CCCH zinc finger 131 161 IPR036855 GO:0046872(InterPro)
Hepe08g2641 388 ProSiteProfiles Zinc finger C3H1-type profile. 132 159 IPR000571 GO:0046872(InterPro)
Hepe08g2641 388 MobiDBLite consensus disorder prediction 284 315 - -
Hepe08g2641 388 PANTHER UNKEMPT FAMILY MEMBER 36 388 IPR045234 -
Hepe08g2641 388 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 136 157 IPR000571 GO:0046872(InterPro)
Hepe08g2641 388 FunFam Zinc finger CCCH domain-containing protein 66 90 158 - -
Hepe08g2641 388 Gene3D - 133 196 - -
Hepe08g2641 388 SMART c3hfinal6 167 190 IPR000571 GO:0046872(InterPro)
Hepe08g2641 388 SMART c3hfinal6 132 158 IPR000571 GO:0046872(InterPro)
Hepe08g2641 388 MobiDBLite consensus disorder prediction 284 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1861 Hepe-Chr1:83561963 Hepe08g2641 Hepe-Chr8:68409621 1.07e-112 dispersed
Hepe02g0123 Hepe-Chr2:1418342 Hepe08g2641 Hepe-Chr8:68409621 2.28e-62 dispersed
Hepe07g0289 Hepe-Chr7:2924467 Hepe08g2641 Hepe-Chr8:68409621 1.16e-54 dispersed
Hepe08g1370 Hepe-Chr8:16076543 Hepe08g2641 Hepe-Chr8:68409621 1.98e-67 dispersed
Hepe08g2641 Hepe-Chr8:68409621 Hepe09g0842 Hepe-Chr9:8293413 1.70e-160 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56290 PF00642 zf-CCCH 7.40E-06 CL0537 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2641 - - - 0.0