Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2670 ATGGTCCTGCCCGGCGGTGGCGGTGGCGGTGGCGGTGAGCCACAGGGTAAAAAGATTGTTAAGGAAGAGGAGATAGAGGAGCAAAATTCTTCTTCTTCTTCTTCAACTTGTTTAATTAAAGAAGGAATCACGGCGGCGAAGAACGGCGGTTGTGCGAAGCCAATGGAAGGGTTGCATGAAATTGGGCCGCCGCCGTTTCTGAAGAAGATTTATGAGATGGTGGAGGATCCGGAAACCGACCCGGTTGTATCTTGGAGCGAAGATCGTAAAAGCTTCATTGTTTGGGATTGTCATCAACTCTCAAAAAATCTTCTCCCTAAATATTTCAAACACTGCAATTTCTCCAGCTTCATTCGCCAGCTTAATACTTATGGTTTTAGGAAGATTGATTCTGATAAATGGGAGTTTGCAAATGAAGGGTTTCAGAGAGGGAAGAAACATTTGCTAAAGAGCATTAAGAGAAGAAGCAGGTACAATAATTACAAGCAGCAGCATTTAGGCATGGCCATGAGTATGACTTTAGAAGATTTAACAAAGCAGCCAGTAGTAGAAACAGAACTTGAAACTCTGAAAACTGATAACAACATTTTGAAAGTAGAGATGTTGAAACTGAGAGAGCAGCAGCAGGACTCACAGAACCAACTCACCATGTTCGAAGAGCGTGTTCGATGTGCCGAGTGCAAGCACCAACAAATGTTCTCTTTCCTTACCAAAATGTCGACAAACCCCGCCTTTTTTCGACAGTTGATGCTCCAAAAAAGATCAATTCTTAGAAAGGAGCTGATCAATGGGAGTGATCATGACTTTGGAAACAAACGGAGATTACTTGCAATGCAAGCCCATCAAAATCTTGGCGTCGAGCCAATCGACACTTCTCGGGATGTCAATTGTGAAAACCATGTCCAAGAAGATCTTCTGAGCATGCAGTCTGAACTCACTCAAATGTTTCCAGAAGTAGTTATCGAACCCGGACCGGTCGAAACGCCATTCCAAGCATCGGTCGATAACAAATCAACAAGTACTTCAAGCGCTGCTAATTGTATGCCACCATCCAGAATATTTGCAGAGAATATGGTTGTTGGTGAAGAATTGATTTCTAATGACTCCAATTTTTTTCTGGAACTGGAGGATCTGATCAAGAAGCCTCATGATTGCGCCACAGGTTATGTACAAAAACAAGTTTTCCATGGTTGTGTTGGATCGATTCCATGA 1212 42.99 MVLPGGGGGGGGEPQGKKIVKEEEIEEQNSSSSSSTCLIKEGITAAKNGGCAKPMEGLHEIGPPPFLKKIYEMVEDPETDPVVSWSEDRKSFIVWDCHQLSKNLLPKYFKHCNFSSFIRQLNTYGFRKIDSDKWEFANEGFQRGKKHLLKSIKRRSRYNNYKQQHLGMAMSMTLEDLTKQPVVETELETLKTDNNILKVEMLKLREQQQDSQNQLTMFEERVRCAECKHQQMFSFLTKMSTNPAFFRQLMLQKRSILRKELINGSDHDFGNKRRLLAMQAHQNLGVEPIDTSRDVNCENHVQEDLLSMQSELTQMFPEVVIEPGPVETPFQASVDNKSTSTSSAANCMPPSRIFAENMVVGEELISNDSNFFLELEDLIKKPHDCATGYVQKQVFHGCVGSIP 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 68733422 68737917 + Hsped.08g26700.1 Hepe08g2670 578642

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2670 403 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 30 334 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Hepe08g2670 403 SMART hsfneu3 62 155 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe08g2670 403 Coils Coil 187 221 - -
Hepe08g2670 403 MobiDBLite consensus disorder prediction 1 36 - -
Hepe08g2670 403 FunFam Heat shock transcription factor 1 59 156 - -
Hepe08g2670 403 ProSitePatterns HSF-type DNA-binding domain signature. 105 129 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe08g2670 403 Pfam HSF-type DNA-binding 66 155 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe08g2670 403 SUPERFAMILY Winged helix DNA-binding domain 62 155 IPR036390 -
Hepe08g2670 403 Gene3D - 59 156 IPR036388 -
Hepe08g2670 403 PRINTS Heat shock factor (HSF) domain signature 66 89 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe08g2670 403 PRINTS Heat shock factor (HSF) domain signature 104 116 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe08g2670 403 PRINTS Heat shock factor (HSF) domain signature 117 129 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2670 K09419 - - csv:101213275 465.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1976 Hepe-Chr6:70986922 Hepe08g2670 Hepe-Chr8:68733422 9.10e-55 dispersed
Hepe08g1399 Hepe-Chr8:16517700 Hepe08g2670 Hepe-Chr8:68733422 1.32e-62 dispersed
Hepe08g2589 Hepe-Chr8:67712420 Hepe08g2670 Hepe-Chr8:68733422 2.55e-44 dispersed
Hepe08g2670 Hepe-Chr8:68733422 Hepe09g0754 Hepe-Chr9:7262005 4.21e-37 dispersed
Hepe08g2670 Hepe-Chr8:68733422 Hepe03g2034 Hepe-Chr3:77715738 9.28e-57 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g1586 . 23 237 HSF AT4G17750 53.4 5.0e-60 229.2
Hepe06g1976 . 40 243 HSF AT4G17750 54.4 2.3e-57 220.3
Hepe08g1399 . 35 235 HSF AT4G17750 51.8 1.3e-55 214.5
Hepe08g2670 . 63 250 HSF AT4G17750 51.5 3.1e-46 183.3
Hepe01g1775 . 20 118 HSF AT4G17750 70.7 8.3e-39 158.7
Hepe08g1292 . 14 115 HSF AT4G17750 67.6 9.1e-38 155.2
Hepe04g1245 . 5 170 HSF AT4G17750 51.2 3.5e-37 153.3
Hepe05g1586 . 41 241 HSF AT5G16820 56.8 1.6e-58 224.2
Hepe06g1976 . 41 247 HSF AT5G16820 54.2 5.0e-57 219.2
Hepe03g2034 . 54 264 HSF AT5G16820 56.1 1.1e-56 218.0
Hepe06g1001 . 24 517 HSF AT1G32330 54.1 3.2e-120 429.1
Hepe03g2034 . 26 260 HSF AT1G32330 50.6 7.0e-59 225.3
Hepe05g1586 . 29 237 HSF AT1G32330 51.1 1.3e-57 221.1
Hepe06g1976 . 29 227 HSF AT1G32330 52.7 2.8e-55 213.4
Hepe08g1292 . 20 120 HSF AT1G32330 68.3 6.8e-38 155.6
Hepe01g1775 . 22 117 HSF AT1G32330 71.9 2.0e-37 154.1
Hepe06g1976 . 41 262 HSF AT3G02990 53.1 1.6e-60 230.7
Hepe03g2034 . 54 269 HSF AT3G02990 54.1 4.0e-59 226.1
Hepe05g1586 . 41 240 HSF AT3G02990 55.0 3.4e-58 223.0
Hepe05g1586 . 29 236 HSF AT2G26150 54.9 6.8e-64 241.5
Hepe03g2034 . 21 259 HSF AT2G26150 52.1 4.1e-61 232.3
Hepe06g1001 . 29 243 HSF AT2G26150 58.3 7.0e-61 231.5
Hepe08g2670 . 53 275 HSF AT2G26150 50.7 1.7e-54 210.3
Hepe07g1835 . 5 150 HSF AT2G26150 53.4 5.2e-40 162.2
Hepe06g1001 . 15 220 HSF AT5G03720 52.9 3.5e-51 199.5
Hepe05g1784 . 13 209 HSF AT4G18880 50.5 3.1e-52 203.0
Hepe05g1784 . 7 464 HSF AT4G13980 52.7 1.0e-115 414.1
Hepe05g1586 . 29 216 HSF AT5G43840 55.3 2.6e-53 206.1
Hepe08g1399 . 24 227 HSF AT5G43840 50.5 1.2e-45 180.6
Hepe06g1976 . 29 346 HSF AT3G22830 51.0 1.3e-87 320.5
Hepe05g1586 . 11 241 HSF AT3G22830 61.2 4.6e-80 295.4
Hepe06g1001 . 31 242 HSF AT3G22830 59.0 5.2e-63 238.8
Hepe08g1399 . 24 233 HSF AT3G22830 54.5 5.7e-62 235.3
Hepe08g2670 . 53 253 HSF AT3G22830 50.2 8.5e-50 194.9
Hepe06g1976 . 29 323 HSF AT3G51910 52.3 8.5e-70 260.8
Hepe03g2034 . 38 260 HSF AT3G51910 58.9 3.1e-64 242.3
Hepe05g1586 . 29 237 HSF AT3G51910 57.3 2.1e-60 229.6
Hepe08g1399 . 24 240 HSF AT3G51910 50.7 1.6e-52 203.4
Hepe08g1399 . 24 223 HSF AT3G63350 52.5 1.9e-48 189.9
Hepe08g1292 . 17 117 HSF AT5G62020 68.3 5.9e-40 161.8
Hepe01g1775 . 16 119 HSF AT4G11660 73.1 2.2e-44 176.8
Hepe08g1292 . 16 121 HSF AT4G11660 69.8 1.1e-43 174.5
Hepe04g1245 . 2 100 HSF AT4G11660 70.7 4.4e-40 162.5
Hepe05g0801 . 22 120 HSF AT4G11660 68.7 2.0e-37 153.7
Hepe09g1181 . 11 108 HSF AT4G11660 67.3 3.5e-37 152.9
Hepe06g1001 . 33 126 HSF AT4G11660 69.1 1.3e-36 151.0
Hepe05g0801 . 19 223 HSF AT2G41690 54.3 7.9e-51 197.6
Hepe04g0401 . 27 215 HSF AT2G41690 55.6 9.1e-47 184.1
Hepe01g1775 . 1 343 HSF AT1G46264 50.7 1.0e-88 323.9
Hepe09g1181 . 12 198 HSF AT1G46264 57.5 2.5e-58 223.0
Hepe06g1001 . 33 136 HSF AT1G46264 73.1 8.1e-41 164.9
Hepe05g1784 . 7 104 HSF AT1G46264 71.4 4.2e-37 152.5
Hepe09g0754 . 11 183 HSF AT3G24520 71.1 5.7e-68 255.0
Hepe08g2589 . 48 218 HSF AT3G24520 62.6 3.7e-59 225.7
Hepe05g1586 . 23 237 HSF AT4G17750 53.4 5.0e-60 229.2
Hepe06g1976 . 40 243 HSF AT4G17750 54.4 2.3e-57 220.3
Hepe08g1399 . 35 235 HSF AT4G17750 51.8 1.3e-55 214.5
Hepe08g2670 . 63 250 HSF AT4G17750 51.5 3.1e-46 183.3
Hepe01g1775 . 20 118 HSF AT4G17750 70.7 8.3e-39 158.7
Hepe08g1292 . 14 115 HSF AT4G17750 67.6 9.1e-38 155.2
Hepe04g1245 . 5 170 HSF AT4G17750 51.2 3.5e-37 153.3
Hepe05g1586 . 41 241 HSF AT5G16820 56.8 1.6e-58 224.2
Hepe06g1976 . 41 247 HSF AT5G16820 54.2 5.0e-57 219.2
Hepe03g2034 . 54 264 HSF AT5G16820 56.1 1.1e-56 218.0
Hepe06g1001 . 24 517 HSF AT1G32330 54.1 3.2e-120 429.1
Hepe03g2034 . 26 260 HSF AT1G32330 50.6 7.0e-59 225.3
Hepe05g1586 . 29 237 HSF AT1G32330 51.1 1.3e-57 221.1
Hepe06g1976 . 29 227 HSF AT1G32330 52.7 2.8e-55 213.4
Hepe08g1292 . 20 120 HSF AT1G32330 68.3 6.8e-38 155.6
Hepe01g1775 . 22 117 HSF AT1G32330 71.9 2.0e-37 154.1
Hepe06g1976 . 41 262 HSF AT3G02990 53.1 1.6e-60 230.7
Hepe03g2034 . 54 269 HSF AT3G02990 54.1 4.0e-59 226.1
Hepe05g1586 . 41 240 HSF AT3G02990 55.0 3.4e-58 223.0
Hepe05g1586 . 29 236 HSF AT2G26150 54.9 6.8e-64 241.5
Hepe03g2034 . 21 259 HSF AT2G26150 52.1 4.1e-61 232.3
Hepe06g1001 . 29 243 HSF AT2G26150 58.3 7.0e-61 231.5
Hepe08g2670 . 53 275 HSF AT2G26150 50.7 1.7e-54 210.3
Hepe07g1835 . 5 150 HSF AT2G26150 53.4 5.2e-40 162.2
Hepe06g1001 . 15 220 HSF AT5G03720 52.9 3.5e-51 199.5
Hepe05g1784 . 13 209 HSF AT4G18880 50.5 3.1e-52 203.0
Hepe05g1784 . 7 464 HSF AT4G13980 52.7 1.0e-115 414.1
Hepe05g1586 . 29 216 HSF AT5G43840 55.3 2.6e-53 206.1
Hepe08g1399 . 24 227 HSF AT5G43840 50.5 1.2e-45 180.6
Hepe06g1976 . 29 346 HSF AT3G22830 51.0 1.3e-87 320.5
Hepe05g1586 . 11 241 HSF AT3G22830 61.2 4.6e-80 295.4
Hepe06g1001 . 31 242 HSF AT3G22830 59.0 5.2e-63 238.8
Hepe08g1399 . 24 233 HSF AT3G22830 54.5 5.7e-62 235.3
Hepe08g2670 . 53 253 HSF AT3G22830 50.2 8.5e-50 194.9
Hepe06g1976 . 29 323 HSF AT3G51910 52.3 8.5e-70 260.8
Hepe03g2034 . 38 260 HSF AT3G51910 58.9 3.1e-64 242.3
Hepe05g1586 . 29 237 HSF AT3G51910 57.3 2.1e-60 229.6
Hepe08g1399 . 24 240 HSF AT3G51910 50.7 1.6e-52 203.4
Hepe08g1399 . 24 223 HSF AT3G63350 52.5 1.9e-48 189.9
Hepe08g1292 . 17 117 HSF AT5G62020 68.3 5.9e-40 161.8
Hepe01g1775 . 16 119 HSF AT4G11660 73.1 2.2e-44 176.8
Hepe08g1292 . 16 121 HSF AT4G11660 69.8 1.1e-43 174.5
Hepe04g1245 . 2 100 HSF AT4G11660 70.7 4.4e-40 162.5
Hepe05g0801 . 22 120 HSF AT4G11660 68.7 2.0e-37 153.7
Hepe09g1181 . 11 108 HSF AT4G11660 67.3 3.5e-37 152.9
Hepe06g1001 . 33 126 HSF AT4G11660 69.1 1.3e-36 151.0
Hepe05g0801 . 19 223 HSF AT2G41690 54.3 7.9e-51 197.6
Hepe04g0401 . 27 215 HSF AT2G41690 55.6 9.1e-47 184.1
Hepe01g1775 . 1 343 HSF AT1G46264 50.7 1.0e-88 323.9
Hepe09g1181 . 12 198 HSF AT1G46264 57.5 2.5e-58 223.0
Hepe06g1001 . 33 136 HSF AT1G46264 73.1 8.1e-41 164.9
Hepe05g1784 . 7 104 HSF AT1G46264 71.4 4.2e-37 152.5
Hepe09g0754 . 11 183 HSF AT3G24520 71.1 5.7e-68 255.0
Hepe08g2589 . 48 218 HSF AT3G24520 62.6 3.7e-59 225.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010256 3 2 2 2 2 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 0 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56292 PF00447 HSF_DNA-bind 1.60E-32 CL0123 Hepe TF