Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2677 ATGTCTATGACACGTACTTCAGTAAGACCTTCAACCGGAGGGAAAATAATAAGCCCGCCATTGATGAAGAAGGACATCTCCATGAATGTTAACTTGAAGCTCGTTCTTCCTCCTCCCGACGAACTTCCCTTCGCCTTCATAACTCGAGGCGGTACTTTCACAGATGGAGATTTGCTTGTCAATAGAGACGGCGTGCGGATTGTTTCTCATACGGAAGGCGAAAGTACTCCACCAATACAGCCCTCAGACAACCATTTGTCTTTAGCAGATTTAGACTCGATTAAAGTCATTGGAAAAGGAAATGGTGGAATTGTTCAATTAGTCCGACATAAATGGACCAACCAGTTTTTTGCTCTAAAGGTGATTCAGATGAATGCAGAGGAATCTCATTGTAGGATGGTTGCTAAAGAACTAAAAATTAATCGATTGGCACAAACCCCTTATATTGTTGTCTGTTACCAGATCTTCTATGACAATGGTGCCATTTTCATCATCTTGGAATACATGGACGGTGGATCGCTTGCAGATCTTCTAAAAAAAGTTGGAACAATCCTAGAGCCGTATCTTGCAGCCATTTGTTACCAGGTCCTCAAGGGGTTAGTATACCTTCACCATGAAAAACATGTCATGCACAGAGACCTTAAGCCTTCTAATTTGTTGATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTTAGTGCTATGCTAGCGAGTACGTCTGATCAGGCAAATACTTTCGTTGGCACGTACGCTTACATGTCTCCCGAGAGAATCAAGGGGGACAAATATGACAACAAAAGTGATATATGGAGTTTGGGATTGGTTTTGCTCGAATGTGCAACGGGTCAATTTCCATATACTCCACCGGATAAGGATAAAGGATGGGAAGGCTATTTTGACGTAATGATAGCTGTAGTAGAACTAGCATCGCCTTCTGCACCCGAACAATTTTCTCCAGAGTTTTGCTCTTTCATTTCTTCATGCTTACAGAAAGACCCGCAGAAGAGAAGCTCTGCACGCGAACTTCTGGTGCATCCTTTCATCAAAAAGTTCGAACACTTCGATGTAGATCTCGCAGATTACTTCAAAGATGCTGGCTCTCCATTGGCAACCTTCTAA 1125 42.4 MSMTRTSVRPSTGGKIISPPLMKKDISMNVNLKLVLPPPDELPFAFITRGGTFTDGDLLVNRDGVRIVSHTEGESTPPIQPSDNHLSLADLDSIKVIGKGNGGIVQLVRHKWTNQFFALKVIQMNAEESHCRMVAKELKINRLAQTPYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVGTILEPYLAAICYQVLKGLVYLHHEKHVMHRDLKPSNLLINHRGEVKITDFGVSAMLASTSDQANTFVGTYAYMSPERIKGDKYDNKSDIWSLGLVLLECATGQFPYTPPDKDKGWEGYFDVMIAVVELASPSAPEQFSPEFCSFISSCLQKDPQKRSSARELLVHPFIKKFEHFDVDLADYFKDAGSPLATF 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 68806504 68823096 - Hsped.08g26770.1 Hepe08g2677 578649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2677 374 SUPERFAMILY Protein kinase-like (PK-like) 75 356 IPR011009 -
Hepe08g2677 374 CDD PKc_MAPKK_plant_like 89 354 - -
Hepe08g2677 374 Gene3D Phosphorylase Kinase; domain 1 69 170 - -
Hepe08g2677 374 FunFam Mitogen-activated protein kinase kinase 6 172 369 - -
Hepe08g2677 374 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524(InterPro)
Hepe08g2677 374 ProSiteProfiles Protein kinase domain profile. 91 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g2677 374 Pfam Protein kinase domain 94 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g2677 374 SMART serkin_6 91 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g2677 374 FunFam Mitogen-activated protein kinase kinase 1 72 170 - -
Hepe08g2677 374 Gene3D Transferase(Phosphotransferase) domain 1 171 369 - -
Hepe08g2677 374 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 67 370 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Hepe08g2677 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2677 Hepe-Chr8:68806504 Hepe09g0895 Hepe-Chr9:8971228 4.97e-187 dispersed
Hepe07g2336 Hepe-Chr7:67729766 Hepe08g2677 Hepe-Chr8:68806504 7.35e-74 transposed
Hepe08g2630 Hepe-Chr8:68262406 Hepe08g2677 Hepe-Chr8:68806504 2.47e-143 transposed
Hepe08g2677 Hepe-Chr8:68806504 Hepe09g0892 Hepe-Chr9:8937139 3.16e-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73099 PF00069 Pkinase 1.00E-70 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2677 K20603 - csv:101206374 656.366