Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2683 ATGGATGGAGGAGCACCTTTCAATCCTCGGACTGTGGAAGAGGTTTTCAGGGACTTAAAGGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACCGACGTCGAAGAATTTTATCAGCAGTGCGACCCTGAGAAGGAAAACCTCTGCCTATATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCTGAAGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAATTTTGCTAGAGATGGGATGGAAGAAAAGGATTGGCTATCCCTTGTTGCTGTTCAGAGTGACGCTTGGCTTCTTGCTGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAATCTGACAGGAAACGCCTTTTTGCGATGATAAATGATATACCCACGATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACTGGGACAAGACAAATCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGACGGTGCCAAAAGGGCTAGGATCTGAATCAAGCAAATTACCCAAGGGGTTAGGAAAAGATGAGGATGAGGGACTGGATGAGGAAGAGGAAGAGGAGCATGGGGAGACCTTATGTGGGGCGTGCGGGGAGAATTATGCATCGGACGAGTTCTGGATATGCTGCGACCTATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCAGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGAGAGCACGGCCCTGA 756 47.35 MDGGAPFNPRTVEEVFRDLKGRRAGMIRALTTDVEEFYQQCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVQSDAWLLAVAFYFGARFGFDKSDRKRLFAMINDIPTIFEVVTGSVKKLGQDKSLVSNNSSNKSKTVPKGLGSESSKLPKGLGKDEDEGLDEEEEEEHGETLCGACGENYASDEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 68852467 68855346 - Hsped.08g26830.1 Hepe08g2683 578655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2683 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Hepe08g2683 251 PANTHER CPG BINDING PROTEIN 8 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Hepe08g2683 251 MobiDBLite consensus disorder prediction 152 166 - -
Hepe08g2683 251 MobiDBLite consensus disorder prediction 152 189 - -
Hepe08g2683 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 246 IPR013083 -
Hepe08g2683 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Hepe08g2683 251 CDD PHD_AL_plant 197 247 IPR044104 -
Hepe08g2683 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Hepe08g2683 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Hepe08g2683 251 FunFam PHD finger alfin-like protein 190 246 - -
Hepe08g2683 251 SMART PHD_3 197 245 IPR001965 -
Hepe08g2683 251 Pfam PHD-finger 198 244 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0774 Hepe-Chr6:54349961 Hepe08g2683 Hepe-Chr8:68852467 3.91e-45 dispersed
Hepe07g0556 Hepe-Chr7:5941507 Hepe08g2683 Hepe-Chr8:68852467 2.36e-118 dispersed
Hepe08g1423 Hepe-Chr8:16817032 Hepe08g2683 Hepe-Chr8:68852467 3.06e-148 dispersed
Hepe03g1442 Hepe-Chr3:71188956 Hepe08g2683 Hepe-Chr8:68852467 2.35e-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56293 PF12165 Alfin 3.50E-68 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2683 K26274 - rcu:8272513 434.876