Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2687 ATGCCGGTGCATCTCACGCCGAATGCAATCTCTGCAATTCTCGCCGGCGACGTTAATTCCAAGCCTCTCTTGCAGGTCCTAGATATCAAGCTGATCGGTAACGCGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCCGTTTCTACCGAGCAGGCTATGCTCGCAACTCAGCTTAATGATATTATTAAGACTGGACGACTCAAGAAAGGATCCGTTATCCAGTTGATCGATTATGTTTGCAGTCCCGTTAAGAACCGCAAGATTATTGTTGTGCTCAGCCTGGAAACTATTATATTGGACTGTGAGATAATTGGGAATCCAAAATCATCTGCTCAATCAGACTTCTTTAAACAAAAGGCAATGCCATCTGGAAATTTAGAGCAACCTGCCAAGGTTGGTAATGGTCGTGTGAGTGCCAAAAATCCAGTTCATAATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCATATCAGCCACCTCCAATTTATAAAAATCACGGTGCAATCATTAAGAACGAGGCACCGGCTCGTATAATTCCCATAGCTGCATTGAATCCTTATCAGGGACGATGGGCTATAAAGGCAAGAGTTACTGCAAAGGGTGATCTCCGTCGCTATAATAATGCCAAAGGAGACGGAAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGTGAGATACGCGTGACCTGCTTCAATGCTGTTGTTGATCGCTTCTATGAGGTCATAGAAGTTGGTAAAGTCTACTTGATTTCTAAAGGTAGCCTAAAACCTGCTCGGAAGGATTTCAATCACCTTAAGAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCACTGTGGAACTTTGCCCAGATGAAGATGATACCATACCAAAACAGCAGTTTTCTTTCAGACCTATCAGTGAAATTGAGATTGCTGAAACCAACTCTATTGTGGATGTTATTGGTATTGTAACATCTATCAATCCGTCAATTCCTGTGTTGAGAAAAAATGGTATGGAAACTCAAAGAAGAGTTCTGAATTTGAAGGATGCTTCTGGCAGAAGTGTTGAGCTGACATTGTGGGGGGATTTTTGCAACAAAGAAGGTCAAGAACTGCAAGAAATAATTAACTTGGGGCTCTCTCCAGTTCTAGCTGTAAAATCTGGGAAGGTAAGTGATTTCACTGGGAAATCCATTGGGACAATATCTTCTACTCAACTTTTCATAAATCCAGATCTTTCTGAGGCTCGCACAGTGAGAGAGTGGTACGATGGTGGGGGGAAGAATACTACTTCTCTGTCTATTTCTAAAGAAACTATGCCAGGAACAGCCAAGAATGAGATTCGGAAGACCGTGTCTCAGATTAAAGATGAAGGACTTGGCAGATCTGATAAACCAGATTGGATTACCGTGAAAGCAACAATATCATTCATCAAAACAGATTCCTTCTGCTACACAGCATGTCCGTTAATGATTGGAGATCGACAATGCAACAAGAAGGTGACTAGATCAGGAAACTCAAAGTGGCTATGTGACAGGTGCAATCAAGAATTTGAGGATTGCGATTACAGATTTCTTCTTCAAGCCCAAATCCAAGACCATACTGGATTGACATGGGTGACAGCCTTCCAGGAATCTGGTGAAGAGATTCTGGGTGTTTCAGCCAAGGAGTTGTACATGTTGAAGTATGAAGAACAGGACGATGTCAAGTTTGGTGAAATAATCAGAAGTAAAATTTTCGATCAATTTCTATTTAGGCTCAAAATTAAAGAGGAGATGTATGGGGATGAACAAAGGGTGAAAACTACTGTAGTCAAGGCAGATAGGGTAAACTATTCTGCAGAAAGCAAATATATGTTGGATTTGCTTTCTAAATTTTCGAGGTAA 1872 41.83 MPVHLTPNAISAILAGDVNSKPLLQVLDIKLIGNAQERYSLLISDAVSTEQAMLATQLNDIIKTGRLKKGSVIQLIDYVCSPVKNRKIIVVLSLETIILDCEIIGNPKSSAQSDFFKQKAMPSGNLEQPAKVGNGRVSAKNPVHNVQSFQATVQPPYQPPPIYKNHGAIIKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVELCPDEDDTIPKQQFSFRPISEIEIAETNSIVDVIGIVTSINPSIPVLRKNGMETQRRVLNLKDASGRSVELTLWGDFCNKEGQELQEIINLGLSPVLAVKSGKVSDFTGKSIGTISSTQLFINPDLSEARTVREWYDGGGKNTTSLSISKETMPGTAKNEIRKTVSQIKDEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQEFEDCDYRFLLQAQIQDHTGLTWVTAFQESGEEILGVSAKELYMLKYEEQDDVKFGEIIRSKIFDQFLFRLKIKEEMYGDEQRVKTTVVKADRVNYSAESKYMLDLLSKFSR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 68915234 68919032 - Hsped.08g26870.1 Hepe08g2687 578659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2687 623 Gene3D - 3 111 IPR012340 -
Hepe08g2687 623 Pfam OB-fold nucleic acid binding domain 193 263 IPR004365 GO:0003676(InterPro)
Hepe08g2687 623 PANTHER REPLICATION FACTOR A 1, RFA1 179 600 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Hepe08g2687 623 FunFam Replication protein A subunit 177 286 - -
Hepe08g2687 623 SUPERFAMILY Nucleic acid-binding proteins 444 621 IPR012340 -
Hepe08g2687 623 CDD RPA1_DBD_B 312 419 - -
Hepe08g2687 623 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Hepe08g2687 623 Gene3D - 430 622 IPR012340 -
Hepe08g2687 623 FunFam Replication protein A subunit 429 621 - -
Hepe08g2687 623 Pfam Replication factor-A C terminal domain 463 614 IPR013955 -
Hepe08g2687 623 CDD RPA1N 9 98 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Hepe08g2687 623 CDD RPA1_DBD_C 447 620 IPR047192 -
Hepe08g2687 623 FunFam Replication protein A subunit 290 428 - -
Hepe08g2687 623 Pfam Replication protein A OB domain 301 405 IPR031657 -
Hepe08g2687 623 Gene3D - 290 429 IPR012340 -
Hepe08g2687 623 FunFam Replication protein A subunit 4 111 - -
Hepe08g2687 623 SUPERFAMILY Nucleic acid-binding proteins 177 291 IPR012340 -
Hepe08g2687 623 Gene3D - 177 287 IPR012340 -
Hepe08g2687 623 NCBIfam replication factor-a protein 1 (rpa1) 4 620 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Hepe08g2687 623 CDD RPA1_DBD_A 180 283 - -
Hepe08g2687 623 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Hepe08g2687 623 SUPERFAMILY Nucleic acid-binding proteins 295 426 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0960 Hepe-Chr6:57235377 Hepe08g2687 Hepe-Chr8:68915234 2.18e-244 dispersed
Hepe08g2687 Hepe-Chr8:68915234 Hepe09g0275 Hepe-Chr9:2352005 3.27e-97 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2687 K07466 - csv:101207583 1167.91