Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2693 ATGAGTGGAAGAAACAGGTTTCCATTCACTGCAACTCAGTGGCAAGAGCTGGAGCACCAAGCTCTCATCTTCAAATACATGGTCTCTGGCATCCCTGTTCCTCCTGATCTGCTCTTCACCATTAAGAGAACAACCTCTTTGGATTCTCCTTTCATTTCCAGGCTCTTTCCCCACCAATATCCAGATGTTGGATGGAACTACTTGCAAATGGGTTCGGGGAGGAAAATCGATCCAGAGCCAGGAAGGTGCAGAAGAACAGACGGCAAGAAATGGAGATGCTCCAAAGAAGCTTACCCAGATTCTAAGTACTGTGAGAGACATATGCACAGAGGCAAGAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACATCAACAATAACAACAAATGCTCTAATAAACTCTAATCCATCCACCCCAGCCATTTCTTCCATCACCCAAAACTCAACTCATTCCCTTCCTTCACTCACCAACTCATTTCCCTCTGAAACTAATAGCCAAAACCTCCACCATTCCTACTTCAATACTCATCCTCCCCACCCTTCTCTCTATCAACATGGCTCTTCTTCTAGGCCCCCTGGGTCTGGTCATCTGCAGCAAAACTCCAACTCCTCCTTGCTTCTGGACCCAGCTTCTTACTCCCACAACAACCCTGATTACAGAAACAGGTATGTTTATGGTGTGAAGGAAGATGTTGATGAACATCCCTTTCTGTCGGAAGAACACTCTGGGAACAACATGAGAGGCTTCTCTACTTCGTCTATGGAAGATTCCAGCTGGCAGCTAACTCCTCTGACAATCAGTTGCTCTTCCTCTTCCAGAAACAAGAACTGCTCTGCTTTACAAGGTGACTACTCTTCTTACTTGCAGCTTCAGAGCTTTGGAGATTCCCCCAAGCAACTCAAGCAAGAGGATCATTACTATTCGCTGCAGAGCAAGATGGAAGGAGATGAACCACAGAAGACTATGCATCACTTCTTTGATGAATGGTCTCCTAAAGACAGAGGATCTTGGCTTGATTTGGATGATAAGTCATCCAATAATACTCGGCTTTCAATGTCTATTCCTAACTCATCACAACATGACTTCTCCTCCTTCTTCAGTTCCAATAAGCATAATGAAAACTGA 1131 44.65 MSGRNRFPFTATQWQELEHQALIFKYMVSGIPVPPDLLFTIKRTTSLDSPFISRLFPHQYPDVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTSTITTNALINSNPSTPAISSITQNSTHSLPSLTNSFPSETNSQNLHHSYFNTHPPHPSLYQHGSSSRPPGSGHLQQNSNSSLLLDPASYSHNNPDYRNRYVYGVKEDVDEHPFLSEEHSGNNMRGFSTSSMEDSSWQLTPLTISCSSSSRNKNCSALQGDYSSYLQLQSFGDSPKQLKQEDHYYSLQSKMEGDEPQKTMHHFFDEWSPKDRGSWLDLDDKSSNNTRLSMSIPNSSQHDFSSFFSSNKHNEN 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 68954490 68955847 - Hsped.08g26930.1 Hepe08g2693 578665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2693 376 MobiDBLite consensus disorder prediction 132 215 - -
Hepe08g2693 376 SMART QLQ_2 7 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe08g2693 376 Pfam QLQ 8 41 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe08g2693 376 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Hepe08g2693 376 Pfam WRC 78 120 IPR014977 -
Hepe08g2693 376 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe08g2693 376 PANTHER GROWTH-REGULATING FACTOR 5 3 360 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Hepe08g2693 376 MobiDBLite consensus disorder prediction 350 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2693 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1533 Hepe-Chr2:20272697 Hepe08g2693 Hepe-Chr8:68954490 5.09e-60 dispersed
Hepe08g1128 Hepe-Chr8:11328023 Hepe08g2693 Hepe-Chr8:68954490 4.40e-48 dispersed
Hepe08g1351 Hepe-Chr8:15641797 Hepe08g2693 Hepe-Chr8:68954490 1.56e-33 dispersed
Hepe08g2693 Hepe-Chr8:68954490 Hepe09g0912 Hepe-Chr9:9131529 6.13e-120 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g2693 . 2 111 GRF Transcription Factor Family AT3G13960 73.2 9.0e-44 174.9
Hepe09g0912 . 8 110 GRF Transcription Factor Family AT3G13960 72.8 6.4e-42 168.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002565 3 3 1 2 3 1 4 1 1 1 2 1 4 1 2 3 1 1 3 1 2 2 2 2 2 1 2 3 2 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56295 PF08879 WRC 7.90E-21 No_clan Hepe TF