Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g2709 ATGAAAGCTCCCCCAAATGGGTTTCTCCCCAATTCTGGAGAAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGACCTCTTGTTTCGTTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCATCAATGAATAAGGAGACTGAGTTCATTCCAAACTACCCTAACCTTCCTTCAAAGTTGATCTGCATGCTCCATAATGTCACATTACATGCTGATCCTGAAACTGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGAAGCTCTATTGGCATCTGATATTGGCCTCAAGCAAAACAGGCAGCCTGCTGAATTCTTCTGCAAAACTCTAACAGCTAGTGACACCAGCACTCACGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTCCCCCCATTAGACTACTCGATGCAACCCCCTGCTCAGGAACTAGTGGCTAGAGATTTGCATGATACTCCATGGACATTCAGACATATTTACCGCGGCCAACCAAAACGACACCTTCTCACCACTGGTTGGAGTGTTTTTGTTAGCACAAAACGACTCTTTGCTGGAGACTCAGTACTCGTTATAAGAGATGAAAAGTCACAGCTTCTCTTAGGCATAAGGCGTGCCAACAGGCAGCAGCCAGCTCTCTCTTCATCAGTCATATCAAGTGATAGCATGCACATAGGGATTCTTGCTTCTGCTGCTCATGCTGCTGCAAATAACAGTCCTTTTACTATATTTTACAACCCTAGGGCCAGTCCTTCTGAATTTGTGATTCCTTTGGCCAAGTATAATAAAGCAATGTATACACAAGTTTCACTTGGAATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTACGCAGATATATGGGTACAATTACTGGTATCAGTGACATGGATTCTGTACGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCGGCAGCTGGTGAACGACCAAACCGAGTTTCTATATGGGAAGTCGAGCCCGTTGTGACTCCCTTTTACATATGTCCACCTCCATTTTTCAGACCCAAATTCCCTAAACAACCAGGGATGCCAGATGACGAATCTGATATTGAAAATTCTTTTAAGAGAGCCATGCCGTGGTTTGGTGATGACTTTGGCATGAAAGATGCACCAAGCTCAATCTTTCCTGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCATCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTTCTCCTAGTGCTCTGCATGGAACTCTTACTAATGAGGACCCGTCTAAATTAATGAGTTTTCAAGCACCAATACTGTCTTCACCCAATCTCCAATTCAGCAAAGCAAATCAACAGAATCAAGTTGGCCAGTTGCCACCAACTACGTGGTCTCAACAGCAGCAGCTGCAGCAATTATTACAAGTTCCTGCAAGCCAACAGTTACACCAGCAGCAGCAGCAGTTGCCCCAGCATCAGGAACTACAGCAGCAGCAACAACATTCACAGCAGCAACACCAGTCACAACAGCCACAACGACAACAGCAGACCTCCCAATCTTCCCTTCTGAGCAATGGTGTAGCTGCTGCTAACCATTTGGCAAATCAGAGTTTGCAACAATCACTTGTATACTCTCAGCTACAGCAACAGCAATTGCTTGCAGGCAATATACAATCACATCAAACTAGCCAACCATCCAATAAAAACTCATTTCAGACTACATCTTTATCGCAAGAAATACAGTTTCAGCCACAAATAGAGCAGCAACCTAACCTTCTTCCGAGACACCAGCAGCAGACACAATTTCAACAGGCCCCACTACAATTATTGCAACAAGGTATCTCTCAAAGAGCACAACAACAGCCACAAGTTCAGCAATTTTCACAGCCAATCCCATCAGAGCAACAACTTCAATTGCAGCTGTTACAGAAGCTGCAACAACAACAGCAGCAGCAGCAGCAACAGCAACAGCAGCAACCATTGCTCTCCCCAGCTAGCCCACTATTACCACCTCAGCTGATACAGCAGCAACATGTCCATCAGCAAAATCAGCAGTTACCACCATTGCCTTTGTCCAATCAGCAGCAGTTCAATACTAGTGGAAGCAGCTTCCAAACAGAAAAACTTAACAGCAATGGCTTCTCAAGTTTAGGTCTCATGCAGTCCCAGCAGGTTCCTATAACCCAATCCCATAACCAATTCAAACCAACCACGGCAATTCGAGCATATTCTGGACTGACTGATGGTGATGCTCCGTCTTGTTCAACCTCACCTTCCACTAATAATTGCCAAGTTTCAGTATCAAACCTGCTCAATAAGAACCAACAAGGAGCAGCCACACTGGGGGGAGATTCGGTAGTTGAGCCTGCAACTAACCTGGCTCAGGAGCTACAAAGCAAACCTGATTTGCGGATCAAACATGAGTTTCCTAACTCAAAGGGATCAGACCAACTAAAATATAAAGGCACCGTTCCTGATCAGTTAGAAGCATCTTCTTCTGGAACATCATATTGTCTGGATGCTGGCACCATTCAGCAGACTTTCCCACTCCCTACATGTTTGGACAATGATGTCCAATCACATCCACGAAACAATATCCCTTTCAGTAATGGCATTGATGGATTGACACCAGATACCTTATTGTCGAGGGGATATGACTCTCAAAAAGATCTTCAGAACTTACTTTCTAACTATGGTGGGGGTGTGCCAAGAGATATTGAGACAGAGTTGTCCACTGCTGCAATCAGCTCTCAGTCATTTGGGGTTCCAAACCTGCCTTTCAAGCCTGGCTGCTCAAATGATGTCAACGTAAATGAAGCTGGAGCCTTGGGTAGTGGATTGTGGGCAAACCACAGTCAACGTATGCGGACATACACAAAGGTTCAAAAGCGCGGATCAGTGGGTAGATGTATTGATGTCACTCGTTACAAAGAATATGACGAGCTTAGACACGATCTTGCCCGCATGTTTGGCATTGAAGGGCAGTTAGAAGATCCTCAACGAACTGACTGGAAACTTGTTTATGTGGATCATGAAAATGATATACTTCTAGTTGGCGATGATCCTTGGGAGGAGTTTGTGAGCTGTGTTCAGAGCATAAAGATCCTGTCATCCGCTGAAGTACAGCAGATGAGTTTGGATGGAAATTTGGGTCACATTCAGGCTCCTAATCAAGCTTGCAGTGGGACGGATAGTGGTAATGCATGGAGAGGGCAGTACGATGACAACTCGGCTGCATCGTTCAATCGATGA 3330 44.8 MKAPPNGFLPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETEFIPNYPNLPSKLICMLHNVTLHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDTPWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLVIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENSFKRAMPWFGDDFGMKDAPSSIFPGLSLVQWMSMQHNNHQFPAAQSGILPSMVSPSALHGTLTNEDPSKLMSFQAPILSSPNLQFSKANQQNQVGQLPPTTWSQQQQLQQLLQVPASQQLHQQQQQLPQHQELQQQQQHSQQQHQSQQPQRQQQTSQSSLLSNGVAAANHLANQSLQQSLVYSQLQQQQLLAGNIQSHQTSQPSNKNSFQTTSLSQEIQFQPQIEQQPNLLPRHQQQTQFQQAPLQLLQQGISQRAQQQPQVQQFSQPIPSEQQLQLQLLQKLQQQQQQQQQQQQQQPLLSPASPLLPPQLIQQQHVHQQNQQLPPLPLSNQQQFNTSGSSFQTEKLNSNGFSSLGLMQSQQVPITQSHNQFKPTTAIRAYSGLTDGDAPSCSTSPSTNNCQVSVSNLLNKNQQGAATLGGDSVVEPATNLAQELQSKPDLRIKHEFPNSKGSDQLKYKGTVPDQLEASSSGTSYCLDAGTIQQTFPLPTCLDNDVQSHPRNNIPFSNGIDGLTPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKPGCSNDVNVNEAGALGSGLWANHSQRMRTYTKVQKRGSVGRCIDVTRYKEYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGHIQAPNQACSGTDSGNAWRGQYDDNSAASFNR 1109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 69072305 69085881 - Hsped.08g27090.1 Hepe08g2709 578681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g2709 1109 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 615 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe08g2709 1109 CDD B3_DNA 125 226 IPR003340 GO:0003677(InterPro)
Hepe08g2709 1109 Gene3D - 289 360 - -
Hepe08g2709 1109 MobiDBLite consensus disorder prediction 509 549 - -
Hepe08g2709 1109 Coils Coil 664 685 - -
Hepe08g2709 1109 FunFam Auxin response factor 124 228 - -
Hepe08g2709 1109 MobiDBLite consensus disorder prediction 583 604 - -
Hepe08g2709 1109 SMART B3_2 126 228 IPR003340 GO:0003677(InterPro)
Hepe08g2709 1109 FunFam Auxin response factor 977 1071 - -
Hepe08g2709 1109 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677(InterPro)
Hepe08g2709 1109 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677(InterPro)
Hepe08g2709 1109 ProSiteProfiles PB1 domain profile. 982 1075 IPR053793 -
Hepe08g2709 1109 Pfam AUX/IAA family 979 1069 IPR033389 -
Hepe08g2709 1109 MobiDBLite consensus disorder prediction 702 736 - -
Hepe08g2709 1109 Pfam Auxin response factor 252 334 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe08g2709 1109 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Hepe08g2709 1109 SUPERFAMILY CAD & PB1 domains 995 1060 - -
Hepe08g2709 1109 Gene3D - 124 227 IPR015300 -
Hepe08g2709 1109 MobiDBLite consensus disorder prediction 1090 1109 - -
Hepe08g2709 1109 FunFam Auxin response factor 289 361 - -
Hepe08g2709 1109 Gene3D - 977 1071 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1631 Hepe-Chr1:81546522 Hepe08g2709 Hepe-Chr8:69072305 1.14e-191 dispersed
Hepe04g2022 Hepe-Chr4:75005464 Hepe08g2709 Hepe-Chr8:69072305 3.24e-190 dispersed
Hepe08g0874 Hepe-Chr8:7925941 Hepe08g2709 Hepe-Chr8:69072305 2.31e-101 dispersed
Hepe08g2070 Hepe-Chr8:58170051 Hepe08g2709 Hepe-Chr8:69072305 7.18e-289 dispersed
Hepe08g2709 Hepe-Chr8:69072305 Hepe09g0011 Hepe-Chr9:120331 2.56e-116 dispersed
Hepe08g2709 Hepe-Chr8:69072305 Hepe07g1742 Hepe-Chr7:59763079 3.77e-193 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56296 PF02309 AUX_IAA 1.90E-09 CL0072 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g2709 K14486 - csv:101210917 1024.62