Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0005 ATGGATCCAGAAGCCCTCTCCGCAACTTTGTTCAAATGGGATCCTCGAGGAATTGTAGGCGGGGGAGGCGGCGCACCCCAGCTCCCAGCACCACTACCACCGCCCTACTCGGTGCGACCGAGGGAGTTGGGACTGGGTGGCCTGGAGGACTTGTTCCAGGCTTACGGTATCAGGTACTACACCGCCGCTAAAATTGCTGAACTTGGATTCACGGTCAGCACACTCCTGGACATGAAAGACGAAGAGTTGGAGGAGATGATGAACAGTCTGTCTCACATTTTCCGGTGGGAGCTTCTGGTGGGTGAGAGGTACGGAATTAAGGCTGCTGTAAGAGCCGAGCGCAGACGTGTAGATGAGGAGATGGAGTCCACCAGACGCCGTCACCTCTTGTCCAACGACACCACTACCAACCTGGTCCTCGATGCCCTTTCTCAGGAAGGGCTTTCGGAAGAGCCGGTGCAGCAGGAGAAGGAAGTAGTGGGGAGCGGGGGAGGAGGAGCGTGGGAGGCAGTTGCAGCAGCAGCCGAGATGAGGAAGAAGCAGCGGAGGAGAAACGGATCAAAGAAGAAGCAGGTGATGGCGATGGAGGCCGAGGATCACGATGAAAACGATCAGGCAGTTGGGGACGATGAGGAGAATTTAGAAGTGAGCGAGAGACAGCGGGAGCATCCATTCATAGTAACAGAGCCAGGGGAGGTTGCACGCGGAAAGAAGAACGGCCTCGACTATCTCTTCCACCTCTACGAGCAGTGTCGTGAATTTTTGATCCAAGTCCAGAACATTGCCAAGGAACGAGGAGAAAAATGTCCCACTAAGGTGACGAACCAGGTTTTTAGATATGCTAAGAAGGCGGGAGCAAGTTACATAAACAAGCCTAAAATGAGACACTACGTGCACTGCTATGCGCTTCATTGTCTGGACGAGGAAGCATCGAACGCATTGAGAAGGGTTTTCAAAGAGAGGGGTGAAAATGTGGGAGCTTGGAGACAGGCATGCTATAAGCCACTGGTAGCCATAGCAGCTGCCCAAGGTTGGGACATCGATGCCATTTTCAACGCACATCCACGCCTCGCCATCTGGTATGTGCCTACCAAACTCCGCCAACTCTGCCACGCCGAGCGCAACACTGCCGCCACACCTTCCTCCACCTCCGCCGATCACTTGCCTTTTTAA 1173 54.31 MDPEALSATLFKWDPRGIVGGGGGAPQLPAPLPPPYSVRPRELGLGGLEDLFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEEMMNSLSHIFRWELLVGERYGIKAAVRAERRRVDEEMESTRRRHLLSNDTTTNLVLDALSQEGLSEEPVQQEKEVVGSGGGGAWEAVAAAAEMRKKQRRRNGSKKKQVMAMEAEDHDENDQAVGDDEENLEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRVFKERGENVGAWRQACYKPLVAIAAAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNTAATPSSTSADHLPF 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 80483 82542 + Hsped.09g00050.1 Hepe09g0005 578689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0005 390 PANTHER PROTEIN LEAFY 1 384 IPR002910 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe09g0005 390 Coils Coil 107 127 - -
Hepe09g0005 390 Gene3D Protein LEAFY 216 384 IPR038276 -
Hepe09g0005 390 Pfam Floricaula / Leafy protein SAM domain 45 121 IPR035079 -
Hepe09g0005 390 MobiDBLite consensus disorder prediction 178 218 - -
Hepe09g0005 390 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 216 378 IPR035209 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0005 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0005 . 1 377 Orphan Transcription Factor Family AT5G61850 69.2 3.3e-129 458.8
Hepe03g1068 . 1 168 Orphan Transcription Factor Family AT1G06040 66.7 8.9e-60 226.9
Hepe07g0957 . 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.1e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007487 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 0 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56297 PF17538 C_LFY_FLO 1.90E-108 CL0123 Hepe TF