Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0007 ATGCATGGGAAGAGACCCTTTGAAGAATCGGAGGAGGTGGAAGAAGAAAACCCGTTCCCGATCTACTCAGCTAGATCCGAACATGACACGTCGGTCATGGTTTCTGCGCTAGCTCAAGTGATCGGTAGCAGAAGCTCAGAAGCAAACCCTAGAAGTAGAACAACAACAAATGATCAAGAGCAGCAGCAACAGCAGCAGCAGGAGGTGACGATCAAAAGAGTACATTATCGAGGAGTAAGGCAGAGACCTTGGGGAAAATGGGCAGCTGAGATTCGTGACCCGAAAAAGGCAGCAAGAGTTTGGCTGGGGACCTTCGACACTGCTGAGGCTGCGGCAATTGCTTACGATGAAGCTGCCCTCAGATTCAAGGGAACCAAAGCCAAGCTCAACTTCCCTGAGAGACTATTATTCATCCAACAGCAACATCTTCATCACACTTCTTCTTCGTCGTCATCGTCATCGTCTTCCTCCTTCTCCACTTCTCATCATCAACAGTACCAGTACCAGTACCAGCCTCCTCCTCCTTAA 528 49.24 MHGKRPFEESEEVEEENPFPIYSARSEHDTSVMVSALAQVIGSRSSEANPRSRTTTNDQEQQQQQQQEVTIKRVHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDEAALRFKGTKAKLNFPERLLFIQQQHLHHTSSSSSSSSSSSFSTSHHQQYQYQYQPPPP 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 100972 102145 - Hsped.09g00070.1 Hepe09g0007 578691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0007 175 PANTHER DNA-BINDING DOMAIN 47 160 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Hepe09g0007 175 MobiDBLite consensus disorder prediction 1 26 - -
Hepe09g0007 175 MobiDBLite consensus disorder prediction 39 70 - -
Hepe09g0007 175 SUPERFAMILY DNA-binding domain 75 133 IPR016177 GO:0003677(InterPro)
Hepe09g0007 175 Gene3D AP2/ERF domain 74 134 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0007 175 CDD AP2 75 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0007 175 SMART rav1_2 75 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0007 175 MobiDBLite consensus disorder prediction 142 168 - -
Hepe09g0007 175 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0007 175 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0007 175 FunFam Ethylene-responsive transcription factor 2 74 133 - -
Hepe09g0007 175 ProSiteProfiles AP2/ERF domain profile. 75 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe09g0007 175 MobiDBLite consensus disorder prediction 142 175 - -
Hepe09g0007 175 Pfam AP2 domain 75 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0471 Hepe-Chr7:4856866 Hepe09g0007 Hepe-Chr9:100972 5.13e-26 dispersed
Hepe09g0007 Hepe-Chr9:100972 Hepe10g0773 Hepe-Chr10:14522157 3.97e-31 dispersed
Hepe03g1176 Hepe-Chr3:65457065 Hepe09g0007 Hepe-Chr9:100972 1.99e-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56298 PF00847 AP2 8.90E-15 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0007 - - - 0.0