Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0011 ATGCCCATGCCCATGCCCTCCTCCGACCTTTCCTTCAACGACCATGCTGATTCCACCAAAGACCCCTCCGATCCACCCAACGCTCTCTCTCCCAGGGATGCTGAAATCGCCCTCTACACCGAGCTTTGGAATGCTTGTGCTGGTCCTCTCGTTTCTGTCCCTCGCGAAAACGAGCGCGTCTTCTACTTCCCTCAGGGCCACATCGAACAGGTGGAAGCATCAACTAATCAAGTCGCCGACCAACAGATGCCTGTTTATAACCTTCCATCCAAGATCCTCTGCCGCGTTATTAATGTCCACTTAAAGGCCGAGCCCGACACCGATGAGGTTTTTGCACAAATAACTTTGCTTCCAGAGGCTAATCAAGATGAGGATGCTGCAGACAACAAACCCCCTCCTCCTCTCCCACGGAGATTTCATGTGCATTCTTTTTGCAAGACTCTCACTGCCTCTGACACTAGTACTCACGGAGGGTTTTCAGTCTTGAGACGCCATGCTGATGAATGTCTTCCTCCACTGGACATGTCACGACAGCCTCCTACCCAGGAGTTGGTTGCAAAGGATTTGCATGCAAATGAGTGGCGTTTTCGTCATATATTTCGAGGACAACCACGAAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTCGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGTGAGAATGGAGAACTGCGCGTTGGTGTTAGGCGTGCCATGAGACAACATGGCAACGTGCCCTCATCAGTCATATCTAGCCATAGCATGCATCTTGGTGTGCTTGCAACTGCTTGGCATGCCATTTCCACAGGCACGATGTTCACTGTCTACTATAAGCCTAGGACAAGCCCTTCTGAATTCATTGTTCCATATGACCAGTATATGGAGTCTATTAAGAAGAGCTACACCATAGGAATGAGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCTGAGCAGAGATTCACGGGTACTATCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGATGGGATGAGACTTCTACTATTTCTCGTCCAGAGAAAGTCTCACCTTGGAAAATTGAGCCTGCTCTTGCTCCTCCTGCACTGAACCCCCTTCCAATGACTAGACCTAAAAGGCCTCGATCAAACATGGTGCCTACATCCCCTGATTCCTCTGTTCTTACACGAGAAGGCTCATCAAGAGTGACTGTAGACCCTTCACCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTATCGATGGCAATGACTCTGATGCTGCTGAAAAATCTGTTATGTGGCCTCCTTCATTAGATGATGAGAAGATTGATGTTGTTTCTACGCCTAAGAAACATGGAGCAGATAACTGGATACCTCCAGGAAGGAGTGAGCCAACCTACGCAGATCTTCTGTCAGGTTTTGGAACTAATATCGATTCATCCCGTGGTGTCCGGGCTGTCATGGGAGATCCAGCAGTAGTAACTGCTAATTCAATCAGAAAGCATGCTATGGATCAAGATGGAAAGTTTAACTTCCTTGGTGGTAGCTCATGGTCTGTCTTGCCTTCTGGTCTCTCGCTCAACCTGATCGACACTAGTCAGAAGGGTCATATTCAGGCCGGTGACTTACCTTATCAAGTGAGAGGAAATGCTACCTTTAATGGCTTTGGTGATCATTCCATGGCCCATTGTCATAGAATTGAACAGCCTCATGGAAACTGGTTGATGCCTCCACCTTCATCTCATTTTGATTATCCAGTTCATTCAACTGAACTGATGTCAAAACCTGTGTTATTTCAGAACCAAGATATTCTGAACCCCAAAGATGGGAATTGTAAGCTTTTTGGGATCTCTCTCAGTAGAAATCCTGCTATTCCAGACCCTGCAGGATTGAATAGAAATATGATGAATGAGGCAGATGTTATGCATCCTACCATACATCAAACCCACTCAAACGAGTCTGACCTCAAGTCTGAACTATTTAGGGGTTCAAAGTTGGCTGATAAATCCCTTTCCATCAATGAGGCTGATAAGTCGCAGCAAACATGCACACAGAACTCGAGGGATGCACAGAGCAAATCACAGGGTGGTTCAACAAGGAGTTGTACAAAGGTCCACAAGCAGGGGATTGCACTTGGAAGGTCAGTCGATCTTAGCAAGTTCAACAATTACGATGAATTGGTTGCTGAATTGGACCAACTGTTTGAATTTGGTGGCGAGCTGCTGGCTCCCAGAAAGAATTGGCTTATCGTATATACGGATGATGAAGGTGATATGATGCTTGTTGGGGACGATCCGTGGCAGTAA 2370 46.67 MPMPMPSSDLSFNDHADSTKDPSDPPNALSPRDAEIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTNQVADQQMPVYNLPSKILCRVINVHLKAEPDTDEVFAQITLLPEANQDEDAADNKPPPPLPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRPRSNMVPTSPDSSVLTREGSSRVTVDPSPASAFTRVLQGQEFSTLRGNFIDGNDSDAAEKSVMWPPSLDDEKIDVVSTPKKHGADNWIPPGRSEPTYADLLSGFGTNIDSSRGVRAVMGDPAVVTANSIRKHAMDQDGKFNFLGGSSWSVLPSGLSLNLIDTSQKGHIQAGDLPYQVRGNATFNGFGDHSMAHCHRIEQPHGNWLMPPPSSHFDYPVHSTELMSKPVLFQNQDILNPKDGNCKLFGISLSRNPAIPDPAGLNRNMMNEADVMHPTIHQTHSNESDLKSELFRGSKLADKSLSINEADKSQQTCTQNSRDAQSKSQGGSTRSCTKVHKQGIALGRSVDLSKFNNYDELVAELDQLFEFGGELLAPRKNWLIVYTDDEGDMMLVGDDPWQ 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 120331 125154 + Hsped.09g00110.1 Hepe09g0011 578695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0011 789 ProSiteProfiles PB1 domain profile. 721 789 IPR053793 -
Hepe09g0011 789 SMART B3_2 144 246 IPR003340 GO:0003677(InterPro)
Hepe09g0011 789 CDD B3_DNA 142 244 IPR003340 GO:0003677(InterPro)
Hepe09g0011 789 MobiDBLite consensus disorder prediction 696 723 - -
Hepe09g0011 789 Pfam Auxin response factor 270 352 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe09g0011 789 MobiDBLite consensus disorder prediction 1 31 - -
Hepe09g0011 789 SUPERFAMILY CAD & PB1 domains 717 789 - -
Hepe09g0011 789 FunFam Auxin response factor 142 246 - -
Hepe09g0011 789 Pfam B3 DNA binding domain 144 245 IPR003340 GO:0003677(InterPro)
Hepe09g0011 789 Gene3D - 141 246 IPR015300 -
Hepe09g0011 789 Gene3D - 717 789 - -
Hepe09g0011 789 ProSiteProfiles B3 DNA-binding domain profile. 144 246 IPR003340 GO:0003677(InterPro)
Hepe09g0011 789 MobiDBLite consensus disorder prediction 378 418 - -
Hepe09g0011 789 MobiDBLite consensus disorder prediction 393 418 - -
Hepe09g0011 789 FunFam Auxin response factor 307 379 - -
Hepe09g0011 789 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 789 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe09g0011 789 SUPERFAMILY DNA-binding pseudobarrel domain 140 273 IPR015300 -
Hepe09g0011 789 Gene3D - 307 377 - -
Hepe09g0011 789 Pfam AUX/IAA family 702 789 IPR033389 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0830 Hepe-Chr7:10325207 Hepe09g0011 Hepe-Chr9:120331 2.40e-177 dispersed
Hepe07g1742 Hepe-Chr7:59763079 Hepe09g0011 Hepe-Chr9:120331 2.27e-119 dispersed
Hepe08g2709 Hepe-Chr8:69072305 Hepe09g0011 Hepe-Chr9:120331 2.56e-116 dispersed
Hepe09g0011 Hepe-Chr9:120331 Hepe08g0874 Hepe-Chr8:7925941 1.65e-144 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56299 PF02362 B3 4.30E-20 CL0405 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0011 K14486 - csv:101206845 1459.51