Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0012 ATGTTAATAGATTATCTTCTAGCTAGCACTATCAGTATCAGTATCACCACCTCCATTAACATCTTTTCCTTTAAAACGCTGACAGTCAGTGGACATATCATGGCTAGAGTTCTGGTTCAGTCGACAAATATTCCTGGTTTGGTCGGTGGAAGAAAGAATGGCCTGTCAAGGGGATCGGGAAATGTTAAACGGGCTGCTAAAATGGTGGCCACCGTACATGCACCTGGCTTGAGAATAACAAGTTTCTCTGGACTTCGAGGGTTTAATTCTTTGGATAACATGTTGAGAACTGGACAGGATTTTCATTCCAAGATGGCCATTACAATCTCTTCTAGGCGACGAAAGGCTAGCAGATGTGTTCCAAGAGCCATGTTTGAGCGTTTCACAGAAAAGGCTATTAAAGTTATCATGCTTGCCCAGGAGGAAGCGAGGCGCCTTGGTCACAATTTTGTTGGCACCGAGCAGATACTTTTAGGTCTTATTGGCGAAGGCACTGGTATCGCTGCTAAGGTTCTTAAATCTATGGGAATTAATCTTAAAGATGCGCGTGTGGAGGTGGAGAAGATAATTGGTCGGGGCAGTGGGTTTGTTGCTGTAGAAATTCCATTCACTCCTCGTGCTAAGCGTGTTTTGGAACTCTCTCTCGAGGAAGCTCGCCAACTTGGCCACAATTATATTGGGTCAGAGCACTTGCTTCTGGGACTACTTCGTGAAGGTGAGGGTGTTGCAGCTCGTGTTCTTGAAAACTTAGGTGCTGATCCTAGTAACATTCGCACTCAGGTTATTCGAATGGTGGGTGAGAGCACAGAAGCTGTTGGTGCTGGTGTTGGAGGAGGGACCACTGGGAACAAGATGCCAACTCTTGAAGAGTATGGCACAAACTTAACTAAGCTGGCTGAAGAGGGTAAACTAGATCCTGTTGTTGGAAGGCAGCAGCAAATAGAACGTGTAACCCAAATTTTGGGTCGGCGAACAAAAAATAATCCTTGCCTCATTGGTGAGCCTGGTGTTGGGAAAACTGCTATTGCAGAAGGTCTGGCTCAAAGGATTGCTAATGGGGATGTTCCTGAAACAATAGAAGGAAAGAAGGTTATAACCCTGGATATGGGCCTTCTTGTAGCTGGCACAAAATATCGTGGAGAGTTTGAGGAAAGATTAAAGAAACTGATGGAGGAAATTAAACAAAGTGATGAGATTATCCTTTTTATTGATGAGGTGCACACATTAATTGGAGCAGGGGCTGCAGAAGGAGCTATTGATGCGGCAAATATATTAAAACCTGCCCTTGCAAGAGGTGAACTGCAGTGCATTGGAGCCACAACATTGGATGAATACAGGAAGCACATTGAGAAAGACCCAGCCTTAGAAAGGAGATTTCAGCCAGTCAAAGTGCCGGAACCATCTGTGGATGAAACCATACAGATTTTGAAAGGTCTTAGAGAGCGCTATGAAATCCACCACAAACTTCGTTACACAGATGAAGCATTAGTAGCTGCTGCGCAGCTGTCATATCAGTACATCAGTGATCGATTCTTGCCTGATAAGGCAATCGACTTGGTTGATGAAGCAGGTTCTCGGGTTCGCCTTCGTCATGCTCAACTACCTGAGGAAGCTAGGGAGCTTGAGAAAGAGCTGAGGCAGATCACAAAGGAGAAGAATGAGGCTGTTCGAAGTCAAGACTTTGAGAAAGCTGGAGAATTGCGCGATAGAGAAATGGAATTTAAGACTAAGATCTCTGCTCTAGTAGATAAGGGCAAGGAGATGAGCAAGGCTGAAAGTGAGGCAGGAGATGTAGGCCCTGTCGTGACTGAAGTTGATATTCAGCATATTGTCTCCTCCTGGACTGGCATTCCTGTCGAGAAAGTATCTACTGACGAATCTGATCGCCTCCTCAAGATGGAAGAGACCCTCCATAAGAGGGTCATTGGTCAAGATGAAGCAGTTAAAGCCATCAGCCGTGCAATACGTCGAGCTCGTGTTGGTCTCAAGAATCCTAATCGTCCAATTGCAAGCTTTATATTTTCAGGACCAACTGGTGTTGGTAAATCTGAGTTAGCAAAAGCATTGGCTGCATACTATTTTGGCTCTGAAGAAGCAATGATTCGCCTTGACATGAGTGAATTTATGGAAAGGCATACCGTCTCTAAACTCATTGGTTCCCCTCCTGGTTATGTTGGTTACACGGAGGGTGGTCAATTAACTGAGGCTGTTCGTCGTCGTCCATACACAGTGGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTGTTCAACATGATGCTCCAAATTTTGGAGGACGGAAGGTTGACAGATAGCAAGGGCAGAACTGTAGACTTCAAAAATACACTTTTGATAATGACATCAAATGTGGGAAGCAGTGTTATAGAGAAGGGAGGTCGCAGAATAGGGTTTGACCTTGATTATGACGAGAAGGATAGTAGTTACAACCGGATCAAGAGCTTGGTGACAGAGGAACTGAAACAATACTTCAGACCTGAGTTTTTGAATAGGTTGGACGAGATGATTGTCTTCCGTCAGCTCACAAAACTGGAGGTGAAGGAAATTGCGGACATAATGCTGAAAGAGGTATTTGATAGATTAAAAGCAAAAGAAATTGAACTTCAAGTGACAGAAAGATTTAGAGATAGGGTGGTTGAGGAAGGATATAACCCAAGCTACGGTGCGAGACCATTGAGAAGGGCAATAATGAGACTTTTGGAGGACAGCATGGCTGAGAAGATGCTGGCAAGGGAGATCAAGGAGGGTGACTCGGTAATAGTGGATGTCGATTCAGATGGAAACGTGACAGTGCTCAACGGCAGCAGCGGTGCTCCCGAGTCCTTGCCGGATGCTATCCCCGTGTAA 2868 45.05 MLIDYLLASTISISITTSINIFSFKTLTVSGHIMARVLVQSTNIPGLVGGRKNGLSRGSGNVKRAAKMVATVHAPGLRITSFSGLRGFNSLDNMLRTGQDFHSKMAITISSRRRKASRCVPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTEAVGAGVGGGTTGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRSQDFEKAGELRDREMEFKTKISALVDKGKEMSKAESEAGDVGPVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKAKEIELQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAPESLPDAIPV 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 128978 136374 + Hsped.09g00120.1 Hepe09g0012 578696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0012 955 ProSiteProfiles Clp repeat (R) domain profile. 125 267 IPR004176 -
Hepe09g0012 955 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 124 272 - -
Hepe09g0012 955 CDD RecA-like_ClpB_Hsp104-like 629 845 - -
Hepe09g0012 955 Pfam C-terminal, D2-small domain, of ClpB protein 848 928 IPR019489 -
Hepe09g0012 955 Coils Coil 531 558 - -
Hepe09g0012 955 Gene3D UVR domain 534 598 - -
Hepe09g0012 955 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 934 IPR027417 -
Hepe09g0012 955 Gene3D - 620 846 IPR027417 -
Hepe09g0012 955 Pfam AAA domain (Cdc48 subfamily) 667 841 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe09g0012 955 SMART AAA_5 668 849 IPR003593 GO:0016887(InterPro)
Hepe09g0012 955 SMART AAA_5 325 465 IPR003593 GO:0016887(InterPro)
Hepe09g0012 955 PANTHER ATP-DEPENDENT CLP PROTEASE 126 935 IPR050130 GO:0005737(PANTHER)|GO:0016887(PANTHER)|GO:0034605(PANTHER)
Hepe09g0012 955 FunFam ATP-dependent chaperone ClpB 848 940 - -
Hepe09g0012 955 SUPERFAMILY Double Clp-N motif 126 267 IPR036628 -
Hepe09g0012 955 ProSitePatterns Chaperonins clpA/B signature 1. 420 432 IPR018368 GO:0005524(InterPro)
Hepe09g0012 955 CDD AAA 308 460 - -
Hepe09g0012 955 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 779 793 IPR001270 GO:0005524(InterPro)
Hepe09g0012 955 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 746 764 IPR001270 GO:0005524(InterPro)
Hepe09g0012 955 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 717 735 IPR001270 GO:0005524(InterPro)
Hepe09g0012 955 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 672 690 IPR001270 GO:0005524(InterPro)
Hepe09g0012 955 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 567 IPR027417 -
Hepe09g0012 955 FunFam ATP-dependent Clp protease ATP-binding subunit 469 553 - -
Hepe09g0012 955 Pfam AAA lid domain 468 569 IPR041546 -
Hepe09g0012 955 Gene3D - 470 614 - -
Hepe09g0012 955 Gene3D - 124 272 IPR036628 -
Hepe09g0012 955 SMART ClpB_D2_small_2 848 938 IPR019489 -
Hepe09g0012 955 FunFam ATP-dependent Clp protease subunit 621 846 - -
Hepe09g0012 955 Gene3D - 279 468 IPR027417 -
Hepe09g0012 955 FunFam Chaperone clpB 1, putative 276 468 - -
Hepe09g0012 955 ProSiteProfiles UVR domain profile. 542 577 IPR001943 GO:0005515(InterPro)
Hepe09g0012 955 Pfam ATPase family associated with various cellular activities (AAA) 330 442 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe09g0012 955 Coils Coil 379 399 - -
Hepe09g0012 955 ProSitePatterns Chaperonins clpA/B signature 2. 702 720 IPR028299 -
Hepe09g0012 955 Pfam Clp amino terminal domain, pathogenicity island component 139 191 IPR004176 -
Hepe09g0012 955 Pfam Clp amino terminal domain, pathogenicity island component 215 266 IPR004176 -
Hepe09g0012 955 Gene3D - 848 944 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0012 K03696 - - csv:101207083 1690.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0872 Hepe-Chr2:10410935 Hepe09g0012 Hepe-Chr9:128978 2.29e-236 dispersed
Hepe07g0226 Hepe-Chr7:2152030 Hepe09g0012 Hepe-Chr9:128978 3.53e-14 dispersed
Hepe09g0012 Hepe-Chr9:128978 Hepe10g1202 Hepe-Chr10:46832612 0.0 dispersed
Hepe09g0012 Hepe-Chr9:128978 Hepe07g2473 Hepe-Chr7:69050869 4.20e-206 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g30 . . . . Bpe12g00459 . . . . . . . . . Sed01g1068 . Cpe04g01638 Bhi02g00620 Tan09g2434 Cmetu06g1260 . Hepe09g0012 . . . . . . . . . . . . . . . . . . . . . . . . Bma08g00280 . . . . . . . . . . . . . . . . . . . . . . . . . Chy02g02702 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002235 2 2 2 1 2 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 1 2 2 1 63