Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0045 ATGGATAGCAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCAGGCCCCCGTTCCGGCCCCTCCCTTCCACCACCTCCTCCAGCAGCAGCAACAGCAACTCCAGATGTTCTGGTCCTTTCAACGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTTCCTTTGGCCCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTCCGTATGATCTCCGCCGAGGCCCCCATTTTGTTCGCCAAGGCCTGCGAACTCTTCATTCTTGAACTCACTATTAGGTCATGGCTCCACGCCGAAGAGAATAAGAGGCGGACATTGCAGAAGAACGATATTGCGGCGGCCATCACCAGGACTGATATCTTTGATTTCTTGGTTGATATTGTTCCTAGGGATGAGATCAAGGACGAGGCTGGCTTGGGAGGCATGGCCGGAGCTACTGCTAGTGGAATGCCTTACTACTATCCACCTATGGGCCAACCGGCCGGGCCTCCCGGAGGGATGATGATTGGGAGACCGGCAATGGATCCAACCGGAGTTTACGCCCAGCCACCGTCGCAGGCGTGGCAATCGGTCTGGCAGACCGCGGCGGAGGACGGTTCTTACGCTAGTGGGGGCAGCAGCGGGCATGGCAATCTTGATGGTCAGAGATAA 663 55.2 MDSNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMAGATASGMPYYYPPMGQPAGPPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGHGNLDGQR 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 366379 371356 + Hsped.09g00450.1 Hepe09g0045 578729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0045 220 Pfam Core histone H2A/H2B/H3/H4 48 119 IPR007125 GO:0003677(InterPro)
Hepe09g0045 220 FunFam Nuclear transcription factor Y subunit gamma 25 134 - -
Hepe09g0045 220 SUPERFAMILY Histone-fold 30 128 IPR009072 GO:0046982(InterPro)
Hepe09g0045 220 MobiDBLite consensus disorder prediction 1 23 - -
Hepe09g0045 220 Gene3D Histone, subunit A 24 134 IPR009072 GO:0046982(InterPro)
Hepe09g0045 220 MobiDBLite consensus disorder prediction 198 220 - -
Hepe09g0045 220 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 32 140 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0045 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0760 Hepe-Chr7:9139025 Hepe09g0045 Hepe-Chr9:366379 3.57e-29 dispersed
Hepe09g0045 Hepe-Chr9:366379 Hepe09g1825 Hepe-Chr9:57828189 1.21e-65 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0045 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.0 2.3e-87 318.9
Hepe09g1825 . 78 246 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 8.1e-53 204.1
Hepe02g0787 . 77 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.4e-52 203.4
Hepe09g1825 . 1 256 CCAAT-HAP5 Transcription Factor Family AT1G08970 56.6 3.9e-55 211.8
Hepe02g0787 . 11 175 CCAAT-HAP5 Transcription Factor Family AT1G08970 66.3 3.5e-48 188.7
Hepe09g0045 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 7.5e-43 171.0
Hepe09g1825 . 16 246 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.7 8.9e-62 233.8
Hepe02g0787 . 23 219 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.6 6.4e-52 201.1
Hepe09g0045 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.5 1.1e-51 200.3
Hepe09g0045 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.3 8.3e-38 154.1
Hepe09g0045 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 3.4e-81 298.5
Hepe09g1825 . 78 246 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 1.2e-49 193.7
Hepe02g0787 . 77 228 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.6e-49 192.6
Hepe02g0787 . 41 208 CCAAT-HAP5 Transcription Factor Family AT1G56170 80.5 1.1e-63 240.0
Hepe09g1825 . 50 214 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.0 5.0e-51 198.0
Hepe09g0045 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 1.2e-49 193.4
Hepe10g0104 . 3 136 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.2 2.7e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56302 PF00808 CBFD_NFYB_HMF 2.20E-17 CL0012 Hepe TF