Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0065 ATGGCACCGGCTGTTCCTATAGACTTTGCTGGACAGAAGGAGTCTAGGAAGTATTCACTTTCACAGGCAATGGGGAAATCGAGGAAATATTCCAAAGGCCTTTCTTTTGGTTTTGTTCCAGATTACCGACATGCTGTCGAAACTGTTGGCGAATCAGAAGGGTTTGGAAGCTCTGGACGAATGGATACTGGAATCTCTACTCTGGATGATTCACGGGCCTTTAAGAGGAAACGTGTTAGTATGAATGTAGATGGTTACGATGGTTTTGGTGCTCCCCTTCAAGTTTTTTCTCTATCAACATTGTCTCGATCTGAAAGGAAGGATTTAGAGATGAGGTTAAAGTTAGAACTTGAGCAGGTCCGAGTTCTGCAAAAGAAAGCTTCTAATGTTAGTTCAAATTTTGCCGTCTCATCATCTAGTAATATCCAGAGTTCCAGCGATCAGCACAGGGGAGCTCCTCCAGAGACTTTTAATAGGTCGTCCGAGGTATCGGTTCCTCCTGCTAAAAAGCCAGTACCCTCTGGGCGCAATGGCCCTTCTGCTAAAAGAAGCTCATCTGGGCGGTTTGAGTCAGTTAAACCAGCTGTTGTATCGACTTCCTCGACAGCATTGTCGTTGAAACAATGTGAACAGCTGCTGCCACGCTTGATGTCGCATCCATTTAGTTGGGTTTTTAACACCCCAGTTGACGTGGTTAAGTTGAATATCCCAGATTATTTTACTGTTATAAAGCGTCCAATGGATCTGGGCACCGTGAAGTCTAAGATTACTGCAGGAGAATACACACATCCATTGGATTTTGCTGCAGATGTTCGACTTACTTTTTCAAATGCGATTGCTTACAATCCTCCCGGGAATGACGTCCATACCATGGCTAAGACACTAAGTAAATATTTTGAAGTTAGATGGAAAACTATAGAGAAAAAGCTCCCAGTAACAACTGAAGAACGATGTCAAGTACCTTCAGCCACAATTCTTCACAAGGAAGCTGAAAGTACTCTGCCCGTGCCACCTTCAAAAAAGACCAAAATCCCTACAAATGGCCCTGATATTCAGCCAAACAGTGTGGTAAAAATCATGACCGACCAGGAGAAGCATAAACTGAGTGTGGAGTTGGAGGCTTTGCTGGGAGAATTGCCCGAAAGCATCATTGATTTCCTAAAGGAGCACAGTTCTAATTCTCAAGGTGGTGAGGACGAGATTGAAATTGACATTGATGCTCTTAGTGACGATACATTGTTTGCATTGAGGAAGCTATTGGACAACTATATGATGGAAAAGCAGAAACGCACAAAGGCTGAACCTTGTGTAGTGGAGCTTCATAACGAATCAGGATTTAGCAATTCATCAATGCCTCCCTGTAAAGGTAATGATCCCATTGATGAGGATGTTGACATTGTTGGTGGAAATGATCCCCCGGTTTCAAGCTATCCTCCAATAGAGATAGAGAAAGATGCAGTCCGTAGAGATAGTAAATGCAGTAATTCCAGTAGCTCAAGTAGTGAATCAGGTTCTTCATCCAGTGATTCTGACTCAGATAGTTTATCGGGAAGTGAATCTAATGCTGTGAAAGCTTTAGATAGTAATGTGGCTCCAAAGGTATTGAAAACACAAAAACTTTCGTTGATTAGGACTAAATTATGGAGAATGTTTTTTATTTCCTTTTCGCACATGACCCTTTTTCTTGACCAAGTATTTACCCATCTCATGGGGAAAATCAGTGGTGTGGATTAA 1734 42.33 MAPAVPIDFAGQKESRKYSLSQAMGKSRKYSKGLSFGFVPDYRHAVETVGESEGFGSSGRMDTGISTLDDSRAFKRKRVSMNVDGYDGFGAPLQVFSLSTLSRSERKDLEMRLKLELEQVRVLQKKASNVSSNFAVSSSSNIQSSSDQHRGAPPETFNRSSEVSVPPAKKPVPSGRNGPSAKRSSSGRFESVKPAVVSTSSTALSLKQCEQLLPRLMSHPFSWVFNTPVDVVKLNIPDYFTVIKRPMDLGTVKSKITAGEYTHPLDFAADVRLTFSNAIAYNPPGNDVHTMAKTLSKYFEVRWKTIEKKLPVTTEERCQVPSATILHKEAESTLPVPPSKKTKIPTNGPDIQPNSVVKIMTDQEKHKLSVELEALLGELPESIIDFLKEHSSNSQGGEDEIEIDIDALSDDTLFALRKLLDNYMMEKQKRTKAEPCVVELHNESGFSNSSMPPCKGNDPIDEDVDIVGGNDPPVSSYPPIEIEKDAVRRDSKCSNSSSSSSESGSSSSDSDSDSLSGSESNAVKALDSNVAPKVLKTQKLSLIRTKLWRMFFISFSHMTLFLDQVFTHLMGKISGVD 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 549981 554303 + Hsped.09g00650.1 Hepe09g0065 578749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0065 577 Coils Coil 106 126 - -
Hepe09g0065 577 Gene3D - 190 321 IPR036427 GO:0005515(InterPro)
Hepe09g0065 577 Pfam Bromodomain extra-terminal - transcription regulation 360 421 IPR027353 -
Hepe09g0065 577 SMART bromo_6 198 308 IPR001487 GO:0005515(InterPro)
Hepe09g0065 577 ProSiteProfiles NET domain profile. 350 431 IPR027353 -
Hepe09g0065 577 ProSiteProfiles Bromodomain profile. 217 289 IPR001487 GO:0005515(InterPro)
Hepe09g0065 577 MobiDBLite consensus disorder prediction 443 520 - -
Hepe09g0065 577 MobiDBLite consensus disorder prediction 332 351 - -
Hepe09g0065 577 PANTHER TRANSCRIPTION FACTOR GTE8 82 525 IPR052442 -
Hepe09g0065 577 SUPERFAMILY Bromodomain 197 311 IPR036427 GO:0005515(InterPro)
Hepe09g0065 577 MobiDBLite consensus disorder prediction 134 163 - -
Hepe09g0065 577 Gene3D - 355 431 IPR038336 -
Hepe09g0065 577 MobiDBLite consensus disorder prediction 178 192 - -
Hepe09g0065 577 PRINTS Bromodomain signature 220 233 IPR001487 GO:0005515(InterPro)
Hepe09g0065 577 PRINTS Bromodomain signature 270 289 IPR001487 GO:0005515(InterPro)
Hepe09g0065 577 PRINTS Bromodomain signature 236 252 IPR001487 GO:0005515(InterPro)
Hepe09g0065 577 PRINTS Bromodomain signature 252 270 IPR001487 GO:0005515(InterPro)
Hepe09g0065 577 MobiDBLite consensus disorder prediction 134 192 - -
Hepe09g0065 577 CDD Bromo_plant1 206 303 IPR037377 -
Hepe09g0065 577 Pfam Bromodomain 209 293 IPR001487 GO:0005515(InterPro)
Hepe09g0065 577 MobiDBLite consensus disorder prediction 492 520 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0065 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g2101 Hepe-Chr4:75845761 Hepe09g0065 Hepe-Chr9:549981 8.07e-09 dispersed
Hepe08g0577 Hepe-Chr8:5029893 Hepe09g0065 Hepe-Chr9:549981 4.79e-37 dispersed
Hepe04g1956 Hepe-Chr4:74427357 Hepe09g0065 Hepe-Chr9:549981 3.01e-33 transposed
Hepe02g1725 Hepe-Chr2:23649518 Hepe09g0065 Hepe-Chr9:549981 2.12e-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47