Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0075 ATGGCGTCAACCACTCTCTCCGTCTCCTCCGCTTCAACAACGACGCCTTGCCTTCCTAATACCACCACCGCCGTCGCTTATTTCAAACCCCATACCAGAAGTTTCTCCACTTTCCTTGAGGGCAAGAGGATAAGTTTGAATCGAACATCGAAAACCAGGCCAATCGGTGCTAAGAATGCTTCTAATGGCATCCATTGCCAGGCTTCTTCTTCTTCTCTTCTTCCGTCTGCTCTTCTTTTCGATTGCGATGGGGTTCTCGTCGATACTGAAAAGGATGGCCATCGGATTTCCTTCAATGAGACTTTTGATGAGAAAGAATTGGGCGTTACCTGGGATGTAGATTTGTATGGTGAGTTACTCAAAATTGGAGGTGGAAAAGAAAGGATGACAGCGTATTTCAATAAGGTTGGATGGCCTGAAAATGCTCCAAAGAATGAAGATGAAAGAAAGACATTCATAGCTGGACTTCACAAGCGAAAGACAGATCTGTTCATGGTTCTTATTGAGAAGCAATTACTACCTCTTCGACCCGGTGTTGCGAAGCTCATCGATCAGGCATTCGCAAACGGAGTGAAAGTTGCTGTTTGTAGCACTTCCAATGAGAAGGCGGTCTCTGCAATAGTATCATTTTTACTGGGACCTCAACGAGCTGAGCAAATTAAGATATTTGCGGGAGATGTAGTGCCTCGAAAGAAGCCTGACCCAGCTATCTATATTTTAGCAGCCAACACCCTGGGTGTTGATCCTTCAAGCTGTGTTGTGGTGGAAGATAGTGCCATTGGCCTTGCAGCTGCCAAATCTGCTGGAATGAAGTGCATAGTAACAAAGAGTGGGTACACGGCCGAGGAAGATTTTCTAAATGCAGATGCAGTCTTTGACTGCATTGGAGATCCCCCGGAAGAGCGATTCGACTTGGCATTCTGTGGAAGCCTTCTTGAAAAGCAGTATGTTAGCTAG 957 45.87 MASTTLSVSSASTTTPCLPNTTTAVAYFKPHTRSFSTFLEGKRISLNRTSKTRPIGAKNASNGIHCQASSSSLLPSALLFDCDGVLVDTEKDGHRISFNETFDEKELGVTWDVDLYGELLKIGGGKERMTAYFNKVGWPENAPKNEDERKTFIAGLHKRKTDLFMVLIEKQLLPLRPGVAKLIDQAFANGVKVAVCSTSNEKAVSAIVSFLLGPQRAEQIKIFAGDVVPRKKPDPAIYILAANTLGVDPSSCVVVEDSAIGLAAAKSAGMKCIVTKSGYTAEEDFLNADAVFDCIGDPPEERFDLAFCGSLLEKQYVS 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 661144 664761 + Hsped.09g00750.1 Hepe09g0075 578759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0075 318 NCBIfam HAD-IA family hydrolase 161 274 IPR006439 -
Hepe09g0075 318 SFLD phosphoglycolate phosphatase 74 301 - -
Hepe09g0075 318 Gene3D Putative phosphatase; domain 2 89 173 IPR023198 -
Hepe09g0075 318 CDD HAD_CbbY-like 80 277 - -
Hepe09g0075 318 SUPERFAMILY HAD-like 76 297 IPR036412 -
Hepe09g0075 318 Pfam haloacid dehalogenase-like hydrolase 77 269 - -
Hepe09g0075 318 PANTHER XYLULOSE-1,5-BISPHOSPHATE (XUBP) PHOSPHATASE 21 305 IPR044999 GO:0016787(InterPro)
Hepe09g0075 318 Gene3D - 77 294 IPR023214 -
Hepe09g0075 318 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 74 301 - -
Hepe09g0075 318 FunFam HAD family hydrolase 168 291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0075 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1427 Hepe-Chr4:69944501 Hepe09g0075 Hepe-Chr9:661144 2.48e-48 dispersed
Hepe07g0756 Hepe-Chr7:9107487 Hepe09g0075 Hepe-Chr9:661144 3.80e-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g885 . . Bda06g00630 . . . . Bma12g01067 . . . Cma11g00055 . Car11g00049 Sed08g0057 . Cpe04g01597 Bhi02g00571 Tan09g2336 Cmetu02g1589 . Hepe09g0075 . . Cla06g01719 Cam06g1909 Cec06g1959 Cco06g1963 Clacu06g1865 Cmu06g1807 Cre06g2622 . . Cone13ag0201 Cone19ag0189 . . . . . Blo15g00238 . . Bpe07g00870 . . . . . Cmo11g00057 . . . . . . . . . . . . . . . . . . . . Lsi06g01613 Csa01g00083 Chy02g02637 Cme02g02036
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009837 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 33