Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0089 ATGGCTTCTACTTCCGCCACCTCAATTTTGAAACCCTTATCCAAAGCAGATTCCTCCTTCCTCTCCTTGCCTTCTGTATTCACCTACAGACCTCCACACTCTTTTCTCTCTTTCCCTTCCAAATTCATCTCCTTCCATCTCTCCTCTTCTCATTCTTCACTCTTTTCCCCATCTAAGAAGAAGCTCCAAGTTGCTTCTGTAGCTCAGACTTCCGACTGGGCTCAAGAAGACGACACCATCACCATCGACCCTAAACTCGGCGGTGGCGAGGAAGACGGACCCCATTGGGAAAATCAAGAGCTGAGTGAGACTGAATCTCGTGTTTCCGGTTGGGAAGAAGGGGAAGAAGCTGAAGCCGGCGAAGAAGATGAGGCCGACAGTGAAGAAGGAGGAGACGAGGAAGAAGGGTCTTATGAGGAACCGAATGAAGACGCCAAACTGTTTGTTGGGAATTTGCCTTATGACGTTGATAGTCAGAAGTTAGCAATGCTCTTTGAGAAGTCTGGAACTGTGGAGATTGCTGAGGTTATTTACAACAGAGAAACAGACCAGAGTCGTGGGTTTGGGTTTGTGACAATGAGTTCTGTGGAAGAAGCTGAGAAAGCTGTGGATAGATTCAACGGTTATGATATATCAGGGAGGTCTTTGACTGTTAATAAGGCTGCCCCAAGAGGTTCAAGGCCAGAACGCACACCTCGACCATATCAAGCCCAAGCCGCTAGCAGAATCTACGTGGGTAATCTTCCATGGGATGTAGATAATTCACGCCTGGAGCAGGTTTTCAGTGAACATGGGAAAGTAGTAGAGGCTCGAGTTCTTTATGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTTGTGACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGAGTATAGATGGAAGGGCAATCAGAGTAAATGTTGCAGAGGAAAAACCAAGGCGCAACTTCTGA 978 47.75 MASTSATSILKPLSKADSSFLSLPSVFTYRPPHSFLSFPSKFISFHLSSSHSSLFSPSKKKLQVASVAQTSDWAQEDDTITIDPKLGGGEEDGPHWENQELSETESRVSGWEEGEEAEAGEEDEADSEEGGDEEEGSYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKSGTVEIAEVIYNRETDQSRGFGFVTMSSVEEAEKAVDRFNGYDISGRSLTVNKAAPRGSRPERTPRPYQAQAASRIYVGNLPWDVDNSRLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSIDGRAIRVNVAEEKPRRNF 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 712705 714860 - Hsped.09g00890.1 Hepe09g0089 578773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0089 325 PANTHER OS02G0815200 PROTEIN 54 323 IPR050502 GO:0003729(PANTHER)|GO:0009535(PANTHER)|GO:1901259(PANTHER)
Hepe09g0089 325 MobiDBLite consensus disorder prediction 83 114 - -
Hepe09g0089 325 FunFam 31 kDa ribonucleoprotein, chloroplastic 68 228 - -
Hepe09g0089 325 MobiDBLite consensus disorder prediction 68 144 - -
Hepe09g0089 325 Gene3D - 89 227 IPR012677 -
Hepe09g0089 325 Gene3D - 228 324 IPR012677 -
Hepe09g0089 325 MobiDBLite consensus disorder prediction 115 140 - -
Hepe09g0089 325 SMART rrm1_1 242 315 IPR000504 GO:0003723(InterPro)
Hepe09g0089 325 SMART rrm1_1 146 219 IPR000504 GO:0003723(InterPro)
Hepe09g0089 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 223 IPR000504 GO:0003723(InterPro)
Hepe09g0089 325 CDD RRM2_NsCP33_like 242 317 IPR048289 -
Hepe09g0089 325 SUPERFAMILY RNA-binding domain, RBD 141 235 IPR035979 GO:0003676(InterPro)
Hepe09g0089 325 FunFam 31 kDa ribonucleoprotein, chloroplastic 229 325 - -
Hepe09g0089 325 Pfam RNA recognition motif 147 216 IPR000504 GO:0003723(InterPro)
Hepe09g0089 325 Pfam RNA recognition motif 243 313 IPR000504 GO:0003723(InterPro)
Hepe09g0089 325 SUPERFAMILY RNA-binding domain, RBD 239 323 IPR035979 GO:0003676(InterPro)
Hepe09g0089 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 241 319 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0089 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1718 Hepe-Chr3:74118502 Hepe09g0089 Hepe-Chr9:712705 2.87e-21 dispersed
Hepe08g1018 Hepe-Chr8:9744275 Hepe09g0089 Hepe-Chr9:712705 2.45e-24 dispersed
Hepe09g0089 Hepe-Chr9:712705 Hepe09g0541 Hepe-Chr9:5091618 4.98e-24 dispersed
Hepe03g1890 Hepe-Chr3:75980795 Hepe09g0089 Hepe-Chr9:712705 4.06e-07 transposed
Hepe05g0262 Hepe-Chr5:3128545 Hepe09g0089 Hepe-Chr9:712705 1.64e-48 transposed
Hepe05g1697 Hepe-Chr5:66869527 Hepe09g0089 Hepe-Chr9:712705 1.58e-43 transposed
Hepe08g0212 Hepe-Chr8:1913393 Hepe09g0089 Hepe-Chr9:712705 1.48e-12 transposed
Hepe10g0593 Hepe-Chr10:7244793 Hepe09g0089 Hepe-Chr9:712705 1.04e-14 transposed
Hepe10g1300 Hepe-Chr10:48790749 Hepe09g0089 Hepe-Chr9:712705 8.78e-09 transposed
Hepe07g2464 Hepe-Chr7:68954378 Hepe09g0089 Hepe-Chr9:712705 5.14e-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g866 . . Bda06g00624 . Bpe12g00685 . . Bma12g01062 . . Cma10g00083 Cma11g00062 Car10g00075 Car11g00056 Sed08g0071 . Cpe04g01590 Bhi02g00588 Tan09g2319 Cmetu02g0952 . Hepe09g0089 . . Cla06g01709 Cam06g1898 Cec06g1947 Cco06g1951 Clacu06g1854 Cmu06g1795 Cre06g2610 . . Cone13ag0188 . . . . . Blo13g00155 Blo15g00244 . . Bpe07g00865 . . . . Cmo10g00085 Cmo11g00064 . . . . . Cpe18g00878 . . . . . . . . . . . . . . Lsi06g01603 Csa01g00094 Chy02g02627 Cme02g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008467 1 1 2 1 1 1 2 1 1 0 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 0 2 1 2 35