Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0112 ATGGCCACCGTCACTACGCAAGCTTCTGCCGCCGTTTTCCGGCCATGCGCCGCCCGATCGAGGTTCCTGTCTGGTTCTTCCGGTAAACTCCACCGTGTGCTGTCGGTTAAGCCGGTGGCTGCTTCGTCATCTTCGTCTTTCAAGGTGGAAGCGAAGAAGGGAGAGTGGTTGCCTGGTCTTCCTTCTCCGGGATACTTGACTGGCAGTCTTCCCGGCGACAACGGATTTGACCCCCTGGGTCTAGCGGAGGACCCAGAGAACTTGAGATGGTTCGTGCAAGCGGAGCTGGTGAACGGGCGGTGGGCGATGCTGGGAGTCGCCGGAATGCTCCTGCCGGAAGTGTTCACGAAGATCGGAATAATCAACGCCCCTCAATGGTACGACGCCGGAAAGGCAGAGTACTTCGCGTCATCTTCAACCCTGTTCGTGATCGAGTTCATCCTGTTCCATTACGTGGAGATCAGAAGGTGGCAGGACATTAAGAACCCAGGCAGCGTTAACCAAGACCCCATTTTCAAGCAGTACAGTTTGCCCAAAAATGAAGTGGGTTACCCCGGTGGCGTTTTCAACCCGCTGAATTTCGCACCCACGCTCGAGGCGAAAGAGAAGGAAATAGCCAATGGGAGACTTGCAATGTTGGCATTTTTGGGGTTCATTGTGCAACATAACGTGACGGGGAAGGGACCGTTCGACAACCTTTTGCAGCACATTTCAGACCCATGGCACAACACCATTGTCCAGACATTCGGTGGAAACTAA 759 54.41 MATVTTQASAAVFRPCAARSRFLSGSSGKLHRVLSVKPVAASSSSSFKVEAKKGEWLPGLPSPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKNEVGYPGGVFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTFGGN 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 895168 896476 + Hsped.09g01120.1 Hepe09g0112 578796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0112 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Hepe09g0112 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
Hepe09g0112 252 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
Hepe09g0112 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 19 245 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Hepe09g0112 252 FunFam Chlorophyll a-b binding protein, chloroplastic 63 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1279 Hepe-Chr8:13977069 Hepe09g0112 Hepe-Chr9:895168 2.16e-60 dispersed
Hepe09g0112 Hepe-Chr9:895168 Hepe09g1201 Hepe-Chr9:14807166 1.26e-49 dispersed
Hepe01g1350 Hepe-Chr1:78679114 Hepe09g0112 Hepe-Chr9:895168 8.55e-29 transposed
Hepe02g1178 Hepe-Chr2:14683397 Hepe09g0112 Hepe-Chr9:895168 4.47e-29 transposed
Hepe02g2965 Hepe-Chr2:78927245 Hepe09g0112 Hepe-Chr9:895168 3.84e-48 transposed
Hepe07g1095 Hepe-Chr7:18324693 Hepe09g0112 Hepe-Chr9:895168 1.67e-27 transposed
Hepe09g0945 Hepe-Chr9:9504103 Hepe09g0112 Hepe-Chr9:895168 4.07e-65 transposed
Hepe10g1514 Hepe-Chr10:51884660 Hepe09g0112 Hepe-Chr9:895168 9.21e-77 transposed
Hepe01g2379 Hepe-Chr1:88170816 Hepe09g0112 Hepe-Chr9:895168 4.58e-26 transposed
Hepe07g2501 Hepe-Chr7:69346219 Hepe09g0112 Hepe-Chr9:895168 3.57e-164 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0112 K08910 - csv:101222701 485.337