Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0125 ATGGAAGGAGGTGATGAACTCCACCACCACCATAACCATAATCACAACCACCTTCAACACCAGCATCAACATCAACATCAGCATCAGCAACAACACCACCACCGCCCCAACTTCCCATTTCAATTACTCGAAAAGAAAGACGACGATGCCGCCTCTTGCTCCACCTCCCCCTACCCTTCTCTTGCTATATCTGCCGACCCGACCACCACCACCACCACCGCTATCACCGCCATCGAAGCCGTAGAGCCCTCCAAGAAACCACCACCAAAGAGAACTTCCACCAAAGACCGCCACACGAAAGTCGACGGGCGCGGCCGTCGCATCCGAATGCCTGCCCTATGCGCGGCGAGGGTATTCCAACTCACCCGCGAACTGGGTCACAAGTCCGACGGCGAAACCATCGAGTGGCTCCTCCAACAGGCGGAACCCGCGGTGATTGCCGCCACCGGAACCGGTACAATCCCGGCCAACTTCACGTCCCTCAACATCTCATTGCGCAGCTCCGGCTCCAGCATCGGTTTGTATAGAGGGACGATGTCCAGTGGGTTGCATTTCATGAACTTTCCGGCGCCGGTAGCCTTACTTCCGGGTCAACAATTCGGGTCGGGGGTCGGCGGCGGATCAGGGAATAATAATAATAGTAGTTCCAGTGAGGGCCACTTGAATATACTTGCTGGCCTGAATCCCTATCGCTCCGTCTCCAGCAGCGGCGTAATGGAGCCGCAGGGAAGCGGCTCGCACTCACATCACGGTGGCGCCGGTGGCGATGATCGCCATGATACAACCAGCCACCACTCCTAG 801 57.18 MEGGDELHHHHNHNHNHLQHQHQHQHQHQQQHHHRPNFPFQLLEKKDDDAASCSTSPYPSLAISADPTTTTTTAITAIEAVEPSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSIGLYRGTMSSGLHFMNFPAPVALLPGQQFGSGVGGGSGNNNNSSSSEGHLNILAGLNPYRSVSSSGVMEPQGSGSHSHHGGAGGDDRHDTTSHHS 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 998999 1000255 + Hsped.09g01250.1 Hepe09g0125 578809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0125 266 MobiDBLite consensus disorder prediction 53 68 - -
Hepe09g0125 266 Pfam TCP family transcription factor 92 181 IPR017887 -
Hepe09g0125 266 MobiDBLite consensus disorder prediction 81 101 - -
Hepe09g0125 266 MobiDBLite consensus disorder prediction 84 101 - -
Hepe09g0125 266 ProSiteProfiles TCP domain profile. 94 148 IPR017887 -
Hepe09g0125 266 MobiDBLite consensus disorder prediction 13 33 - -
Hepe09g0125 266 MobiDBLite consensus disorder prediction 232 266 - -
Hepe09g0125 266 MobiDBLite consensus disorder prediction 251 266 - -
Hepe09g0125 266 MobiDBLite consensus disorder prediction 1 35 - -
Hepe09g0125 266 MobiDBLite consensus disorder prediction 48 68 - -
Hepe09g0125 266 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 72 220 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0125 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1690 Hepe-Chr2:22930282 Hepe09g0125 Hepe-Chr9:998999 2.10e-36 dispersed
Hepe02g2449 Hepe-Chr2:70711405 Hepe09g0125 Hepe-Chr9:998999 1.33e-34 dispersed
Hepe03g0481 Hepe-Chr3:7455202 Hepe09g0125 Hepe-Chr9:998999 1.14e-34 dispersed
Hepe03g1140 Hepe-Chr3:64607099 Hepe09g0125 Hepe-Chr9:998999 1.25e-36 dispersed
Hepe09g0125 Hepe-Chr9:998999 Hepe10g1486 Hepe-Chr10:51695896 2.84e-41 dispersed
Hepe10g1732 Hepe-Chr10:54154477 Hepe09g0125 Hepe-Chr9:998999 2.76e-52 wgd
Hepe07g2519 Hepe-Chr7:69524841 Hepe09g0125 Hepe-Chr9:998999 3.40e-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g537 Blo04g00768 . Bda06g00547 Bda15g00599 Bpe12g00551 . . Bma12g00998 Cmo13g01176 . Cma10g00186 . Car10g00176 Car11g00147 Sed08g0209 Cpe20g00029 . Bhi02g00330 Tan09g2130 Cmetu02g1507 . Hepe09g0125 . . Cla06g01596 Cam06g1770 Cec06g1822 Cco06g1829 Clacu06g1733 Cmu06g1677 Cre06g2493 . . . Cone19ag0075 Lsi02g00060 Csa01g00533 Chy12g01554 Cme12g02008 Blo13g00013 Blo15g00307 . Bda14g00846 Bpe07g00785 Bpe15g00605 . Bma08g00216 . Cmo10g00203 Cmo11g00159 Cma13g01122 . Car13g00957 . . Cpe18g00799 . . . . . . . Cla04g01209 Cam04g1275 Cec01g1783 Cco01g1830 Clacu04g1303 Cmu04g1279 Cre01g1570 Lsi06g01472 Csa01g00228 Chy02g02504 Cme02g01890
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2449 . 39 245 TCP Transcription Factor Family AT5G23280 65.2 1.6e-67 253.1
Hepe01g0906 . 114 332 TCP Transcription Factor Family AT5G23280 58.9 2.5e-60 229.2
Hepe03g0481 . 1 330 TCP Transcription Factor Family AT2G45680 50.1 5.0e-70 261.9
Hepe09g0125 . 35 174 TCP Transcription Factor Family AT3G47620 63.0 1.6e-42 171.0
Hepe07g2519 . 103 204 TCP Transcription Factor Family AT3G47620 82.4 3.7e-39 159.8
Hepe10g1486 . 143 234 TCP Transcription Factor Family AT3G47620 84.9 5.9e-37 152.5
Hepe09g0125 . 90 172 TCP Transcription Factor Family AT1G69690 95.2 1.0e-37 154.5
Hepe02g1690 . 42 305 TCP Transcription Factor Family AT3G27010 56.4 8.3e-61 231.1
Hepe03g1140 . 29 261 TCP Transcription Factor Family AT3G27010 52.6 3.7e-53 205.7
Hepe02g2449 . 9 244 TCP Transcription Factor Family AT5G08330 57.7 6.6e-66 247.7
Hepe01g0906 . 114 330 TCP Transcription Factor Family AT5G08330 57.9 6.1e-56 214.5
Hepe09g0277 . 29 123 TCP Transcription Factor Family AT5G60970 78.1 1.1e-37 154.5
Hepe02g0930 . 37 149 TCP Transcription Factor Family AT3G02150 67.5 7.3e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56314 PF03634 TCP 4.20E-37 No_clan Hepe TF