Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0139 ATGGGTCTTTTCATTTGGGTCTTCTCCGTTATTTCTGCAGCAACCCTTTTGAGCCACTGCTCTTTTTCTCTCACTGAAGATGGTTTGACATTGTTGGAAATCAAAAGTAGTTTAAATGACACTAAAAATGTCCTTAGTAATTGGAGCCCTTCAGATGAATCTCCTTGCAAATGGACTGGTATCTCTTGCCATCCCCAGGACTCTCGTGTCAGCTCAATTAATCTGCCATTCATGCAATTAGGAGGGATTATATCTCCCAGTATTGGTAAACTTAGTAGATTGCAGAGACTGGCTTTCCACCAGAACGGATTACATGGATATATCCCCAATGAACTTGCCAATTGTTCTGAACTTAGAGCCCTGTACCTGAGGGCTAATTATCTTCAAGGTGGCATTCCATCAAATATTGGAAACCTTTCTTACCTTACCATACTTGATTTATCAGTCAATTCCCTCAAGGGGAGTATACCATCATCACTTGGTCGTCTCACACACTTGCGCAATCTGAATTTATCTACCAACTTTTTTTTTGGAGAAATCCCAGATATTGGAGTTCTAAGCACCTTTGGGAATGACTCGTTCCTTGGTAATCAAGATCTTTGTGGCCGGCAAGTGAACAAGCCGTGTCGGACCTCACTCGGGTTTCCTGCTGTTTTACCACATGCTGAAAGTGATGAAGCTGCAGTTCCTGCAAAACGAACCTCTCATTACCTCAAAGGACTGTTGATTGGTGCAATATCAGCAGCGGGGTTTGTGTTGGTCATACTTTTTGTATTCATGTGGACTCGTGTGCTGTCCAAGAAAGAAAGAACTGCAAAGAGTTACACTGAAGTTAAGAAGCAAAATAGTCGTGAATCGAGTGCGAAGCTGATTACATTTCATGGCGATCTACCATACCCAACATGTGAGATCATAGAAAAACTGGAGGCCCTTAAAGAAACAAATGTTGTTGGATCAGGAGGGTTCGGCACAGTGTATCGGATGGTCATGAATGATTGTGGAGCATTTGCTGTAAAGAAAATCGATAGGACTCAAGACGGTTCAGACCAAGTAGTTGAAAGAGAATTGGAGATATTGGGAAGCATTAAACACATCAATTTAGTGAAATTGCGTGGTTATTGCAGGCTTCCTTCTTCAAAGCTTCTTATATATGACTATGTGGCAGCCGGTAGCTTGGATGATTTCTTACATGAACATAGACCAGAAAAATGTTTGGATTGGAATGCACGATTAAACATAGCGCTAGGGTCCGCTCGAGGACTGGCGTACTTGCACCATGATTGCTGTCCAAAGATTGTGCACTGCAACATAAAATCCAGCAACATTCTTCTTGACGACAACTTAGAGCCACACGTATCCGACTATGGTCTTGCAAAGCTTTCAGTTGATGGGGATTCCCATGTCACAACTGTTGTTGCTGGCACATTTGGTTATTTGGCTCCAGAGTACTTGGAAAGTGGGATAGGAACTGAGAAGTCTGATGTTTATAGTTTTGGAGTTCTCTTGCTGGAGCTTGTGACAGGGAAGAGACCTAGCGATCCATTTTTCTCAAAGAGGGGCTTGAATGTTGTTGGTTGGTTGAACACACTCCGGGGAGAAGACCAATTGGAGAACATAGTGGATAATAGGTGCAACAATGCAGATGTTGAAACTTTAGAAGCGATTCTCGAAATTGCGGCGAGGTGCACCGATGGCAACCCGGCGATGCGGCCTACAATGAACCAAGTACTGCAGCTGATAGAGCAAGAGGTCATGTCGCCCTACCCGAGTGATTACTCCGATTATTCCTGA 1791 43.38 MGLFIWVFSVISAATLLSHCSFSLTEDGLTLLEIKSSLNDTKNVLSNWSPSDESPCKWTGISCHPQDSRVSSINLPFMQLGGIISPSIGKLSRLQRLAFHQNGLHGYIPNELANCSELRALYLRANYLQGGIPSNIGNLSYLTILDLSVNSLKGSIPSSLGRLTHLRNLNLSTNFFFGEIPDIGVLSTFGNDSFLGNQDLCGRQVNKPCRTSLGFPAVLPHAESDEAAVPAKRTSHYLKGLLIGAISAAGFVLVILFVFMWTRVLSKKERTAKSYTEVKKQNSRESSAKLITFHGDLPYPTCEIIEKLEALKETNVVGSGGFGTVYRMVMNDCGAFAVKKIDRTQDGSDQVVERELEILGSIKHINLVKLRGYCRLPSSKLLIYDYVAAGSLDDFLHEHRPEKCLDWNARLNIALGSARGLAYLHHDCCPKIVHCNIKSSNILLDDNLEPHVSDYGLAKLSVDGDSHVTTVVAGTFGYLAPEYLESGIGTEKSDVYSFGVLLLELVTGKRPSDPFFSKRGLNVVGWLNTLRGEDQLENIVDNRCNNADVETLEAILEIAARCTDGNPAMRPTMNQVLQLIEQEVMSPYPSDYSDYS 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1102754 1106422 - Hsped.09g01390.1 Hepe09g0139 578823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0139 596 Gene3D Transferase(Phosphotransferase) domain 1 387 588 - -
Hepe09g0139 596 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 86 IPR050647 -
Hepe09g0139 596 SUPERFAMILY Protein kinase-like (PK-like) 289 580 IPR011009 -
Hepe09g0139 596 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Hepe09g0139 596 Pfam Leucine Rich Repeat 118 139 IPR001611 GO:0005515(InterPro)
Hepe09g0139 596 ProSitePatterns Protein kinases ATP-binding region signature. 317 340 IPR017441 GO:0005524(InterPro)
Hepe09g0139 596 SUPERFAMILY L domain-like 25 189 - -
Hepe09g0139 596 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Hepe09g0139 596 Gene3D Phosphorylase Kinase; domain 1 270 386 - -
Hepe09g0139 596 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 387 591 - -
Hepe09g0139 596 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 186 - -
Hepe09g0139 596 ProSiteProfiles Protein kinase domain profile. 311 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe09g0139 596 Gene3D Ribonuclease Inhibitor 25 211 IPR032675 -
Hepe09g0139 596 Pfam Protein kinase domain 313 578 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0840 Hepe-Chr7:10597574 Hepe09g0139 Hepe-Chr9:1102754 8.12e-145 dispersed
Hepe09g0139 Hepe-Chr9:1102754 Hepe10g0030 Hepe-Chr10:283159 1.80e-72 dispersed
Hepe07g2279 Hepe-Chr7:67118446 Hepe09g0139 Hepe-Chr9:1102754 8.43e-281 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73103 PF00069 Pkinase 8.70E-44 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0139 - - - 0.0