Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0143 ATGTTGCGAGCAAAGCAGATTGGCAGTCTTTCCAGCAGTGCCAGATCATTTTTTCTTAGTGGATCACGTTGTAATGCAGATGGGTCTTCATGTACATGCCCTGAAGATGAAACTTGTGTTTCCCAGAGGCAAAGTTCTAGAAATGAAATCCTACCCTCACAAAAGCCATCCACCTTGGTAGCCAATAGTTCAGCTAGAATAGGACCTTCAATCGTAGAAGAGGCAGCAAAAGTAACTGTGTCTCGCAAAACTGATAATGTTGATCTTTCAGTTTCCTTACGACGAGTTACGAACACTGGCCCCAATCCCCAGAGGGGAACAGAATGTGTAAGATACGCCAGTGGACTTAACACTGTTCTGGATGATGAGTGCACTTCACCAAAGATTGGAGATCAGTTTGTCAAGGCAGGTATTGTCGCTGTGAACTTATTCTCTGACTTTGTGAATTTGAAAGTCCCCTTATCCGACAATGGTGGAACATTTAGCTCATCTAGAAATTGCATGGTCGATCCTGCCCGGACCATTTCATCTGTCAAACCATCAAAAATCAAACATCTAAGAAGACAAAACATTTCTAGTGTTCATTCCAGACCATCTGTTGAAATCCATGTAGATTCTAAGCCTGAAAGTAGTAGTAACCATCATGGTCCGAAAGGCAAGCCCGAGCAATCCCATTATGTTAGAGGCTTGAAGCAAGTTCCAGATGCCAGGTCACGAAATTCAGTGGTATTTCATAATAACTCCTCTGACAAATGTGATAAAAGGATTTTACCCCAAAAATCAAGGGTTCATTCGAACAACTTTACATCACATTTTCATTCCAATTCACAGACCACAGGTTCTAAGAATTTGAACAAACTTCCGGATAATTTAAAAAGCTCAATAGGGATGTCCCCAATCACTATGCAGTTTTCGAATGCCTCACCTGTTGTGGAAAGTGTTTCTTGCATGTTGCAACAACTTAAATGGGGATCAGCTGCTGAAGAGTCTCTTGGGAAATTGAACTGTTCAATAGATGCTTTCCAAGCAAACCAAATTCTGAAGCGGGTAGACGACCACTCTGTTGCTCTTGGTTTTTTTTATTGGTTAAAGCGCCTGGCTAGATTTAGACACGATGGGCACACTTATACTACTATGATTGGCCTCCTTGGTCGCGCCAAACAATTTGGTGCTATAAATAAATTGCTTGATCAGATGATCAAGGATGGGTGCCAGCCCAATGTTGTAACATATAATCGTATAATTCATAGTTATGGTCGTGCAAACTACTTGAAAGAAGCTGTTGATGTATTCAAACAAATGCAGGAAGCAGGATGCGAACCTGATCGAGTCACCTACTGCACACTCATTGACATTCATGCAAAATCTGGCTTTCTTGATGTTGCCATGGGAATGTATGAAAAGATGCAAGAGGCTGGCCTCACTCCCGACACGTTTACTTACAGTGTTATGATCAACTGCTTGGGGAAAGCTGGTCATTTAAATGCTGCTCATAGGCTTTTCTGTAGGATGATTGATCAAGGCTGTGTTCCAAATTTGGTCACTTACAATATTATGATTGCTCTTCAAGCGAAAGCGAGAAATTATGAGATTGCATTGAAGCTGTACCGTGATATGCAACAATCAGGCTTTGAGCCAGATAAAGTGACTTACTGCATAGTTATGGAAGTATTGGGTCATTGTGGTTTCCTTGATGAGGCAGAAGGTATATTTATTGAGATGCAAAAGAAGAATTGGGTGCCTGATGAACCTGTTTATGGTCTATTAGTGGACCTGTGGGGAAAATCTGGTAATGTTCAAAAGGCATGGGAATGGTATCATGCTATGCTTAATGCGGGTTTAAAGCCGAATGTACCTACCTGCAATTCCTTGCTTAGCACCTTTCTTAGAGTACACCAACTATCAGATGCCTATCAGTTGTTACAATCCATGCTGACTTTTGGTCTAAAACCTTCTCTACAAACTTATACCTTGCTTCTCAGTTGTTGCACTGATGCACAAACGAATGACATGGGGTTTTGTTGTGAACTCATGCAAATCAGTGGTCACCCAGCACACACATTCCTGGTGTCGTTGCCATCGGCTGGACCTAATGGTCAAAACGTGCGAGATCACATGAGCAAATTTTTGGACCTCATGCACAGTGAAGATAGAGAGAGCAAGCGGGGACTTGTGGATGCAGTTGTAGATTTTCTTCATAAATCAGGACTCAAGGAGGAGGCAGGCTGCGTCTGGGAGGTTGCTATGCGAAATAATGTCTATCCAGATGCTGTGAAGGAGAAAAGCTCCTGTTATTGGCTCATTAACCTGCACGTCATGTCCGATGGCACTGCCGTGACAGCTTTGTCTAGGACTCTTGCTTGGTTTCGCCAGCAAATGCTTCTTTCGGGTGTCGGTCCTAGCAGAATCGATATCGTGACTGGATGGGGACGGCGAAGTAGGGTCACTGGATCCTCTCTAGTGAGGCAGGCAGTTCAGGACCTGCTGAGCATTTTTAACTTCCCTTTCTTCACTGAAAATGGTAATTCTGGATGTTTTGTGGGGTGTGGGGAGCCTCTTAGTAGATGGTTGCACCAAACTTATGTGGAGAGGATGCATTTGTTGTAG 2607 43.04 MLRAKQIGSLSSSARSFFLSGSRCNADGSSCTCPEDETCVSQRQSSRNEILPSQKPSTLVANSSARIGPSIVEEAAKVTVSRKTDNVDLSVSLRRVTNTGPNPQRGTECVRYASGLNTVLDDECTSPKIGDQFVKAGIVAVNLFSDFVNLKVPLSDNGGTFSSSRNCMVDPARTISSVKPSKIKHLRRQNISSVHSRPSVEIHVDSKPESSSNHHGPKGKPEQSHYVRGLKQVPDARSRNSVVFHNNSSDKCDKRILPQKSRVHSNNFTSHFHSNSQTTGSKNLNKLPDNLKSSIGMSPITMQFSNASPVVESVSCMLQQLKWGSAAEESLGKLNCSIDAFQANQILKRVDDHSVALGFFYWLKRLARFRHDGHTYTTMIGLLGRAKQFGAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLKEAVDVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQEAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMIDQGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLDEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLNAGLKPNVPTCNSLLSTFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQTNDMGFCCELMQISGHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGCVWEVAMRNNVYPDAVKEKSSCYWLINLHVMSDGTAVTALSRTLAWFRQQMLLSGVGPSRIDIVTGWGRRSRVTGSSLVRQAVQDLLSIFNFPFFTENGNSGCFVGCGEPLSRWLHQTYVERMHLL 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1148696 1152272 + Hsped.09g01430.1 Hepe09g0143 578827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0143 868 Gene3D - 746 847 IPR036063 -
Hepe09g0143 868 MobiDBLite consensus disorder prediction 184 225 - -
Hepe09g0143 868 Pfam PPR repeat 473 504 IPR002885 -
Hepe09g0143 868 SUPERFAMILY HCP-like 407 615 - -
Hepe09g0143 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Hepe09g0143 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 547 581 IPR002885 -
Hepe09g0143 868 SMART SMR_2 765 851 IPR002625 -
Hepe09g0143 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 617 651 IPR002885 -
Hepe09g0143 868 Pfam PPR repeat 375 404 IPR002885 -
Hepe09g0143 868 Pfam PPR repeat 585 613 IPR002885 -
Hepe09g0143 868 SUPERFAMILY SMR domain-like 766 846 IPR036063 -
Hepe09g0143 868 ProSiteProfiles Smr domain profile. 768 849 IPR002625 -
Hepe09g0143 868 Gene3D Tetratricopeptide repeat domain 610 678 IPR011990 GO:0005515(InterPro)
Hepe09g0143 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Hepe09g0143 868 Gene3D Tetratricopeptide repeat domain 459 609 IPR011990 GO:0005515(InterPro)
Hepe09g0143 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 582 616 IPR002885 -
Hepe09g0143 868 MobiDBLite consensus disorder prediction 200 225 - -
Hepe09g0143 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Hepe09g0143 868 Gene3D Tetratricopeptide repeat domain 315 458 IPR011990 GO:0005515(InterPro)
Hepe09g0143 868 Pfam PPR repeat family 511 558 IPR002885 -
Hepe09g0143 868 Pfam PPR repeat family 406 454 IPR002885 -
Hepe09g0143 868 Pfam PPR repeat family 616 663 IPR002885 -
Hepe09g0143 868 NCBIfam pentatricopeptide repeat 549 583 IPR002885 -
Hepe09g0143 868 NCBIfam pentatricopeptide repeat 514 547 IPR002885 -
Hepe09g0143 868 NCBIfam pentatricopeptide repeat 620 652 IPR002885 -
Hepe09g0143 868 NCBIfam pentatricopeptide repeat 585 618 IPR002885 -
Hepe09g0143 868 NCBIfam pentatricopeptide repeat 409 442 IPR002885 -
Hepe09g0143 868 NCBIfam pentatricopeptide repeat 374 408 IPR002885 -
Hepe09g0143 868 NCBIfam pentatricopeptide repeat 444 478 IPR002885 -
Hepe09g0143 868 NCBIfam pentatricopeptide repeat 479 512 IPR002885 -
Hepe09g0143 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Hepe09g0143 868 PANTHER OS03G0856100 PROTEIN 136 862 - -
Hepe09g0143 868 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 512 546 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0143 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g487 . . Bda06g00556 . Bpe12g00560 . . . . . . . . . Sed12g1925 . . Bhi02g00357 Tan09g2169 Cmetu02g0830 . Hepe09g0143 . . Cla06g01612 Cam06g1790 Cec06g1840 Cco06g1847 Clacu06g1750 Cmu06g1694 Cre06g2511 Cone2ag0866 Cone16ag0141 Cone13ag0093 Cone19ag0096 . . . . Blo13g00026 Blo15g00297 . . Bpe07g00797 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01494 Csa01g00208 Chy02g02524 Cme02g01910
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009833 1 1 2 0 2 3 0 1 1 1 1 1 0 1 1 0 1 4 0 1 1 1 1 1 1 1 1 1 2 1 33