Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0154 ATGGATCCTCCACTCGTCAATGAATCCTCCTTCTCCGCTGCGAATCCCTCTTCTTACAGCTTGGCCGCGATTTGGCCTTTCGTCGGAGAGCACGGCGGGAGCGCATTGGGCCTCCGAATGACTAATTTCGGTCAGAATCTTGGTGGGTTTCTCGAGAGCTCCACCAATCGCGACGGATCAATGGAGGAATCCACGGTGACGGAGCAGAGTGCCGGTGGGAGGAAGAGGAAGGATGTTAGCTCCGAGGATGAATCTTCCAGAATGGTTTCCACTAGTAGTGCTAATCAATTGAGTAACTCAGATGGTAAACGGATGAAAGTAGTGGAATCCAGAGATGAAAATGGTGGTATAAAAGCTGAAGTCGAACCTAGCTCAGCAGATGGTAAGAAGCTGGCCGAAGATAGCTCGAAACCTTCTGAACCACCAAAGGATTACATCCATGTGAGAGCGAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATCAGTGAGAGAATGAAAACTTTGCAGGACTTGGTTCCAGGCTGTAACAAGGTTATTGGAAAAGCACTTGTCCTTGATGAGATAATAAATTATATCCAATCATTGCAACGCCAGGTCGAGTTCCTCTCCATGAAGCTTGAAACTGTGAATTCCAGGATGAACATAAGCCCTGGCATCGAAGGTTTTACCATAAAAAATATTGTTAATCAACAATATGATGCAGCTGGAATATTATATGGTTCACAAGCAGCAAGAGAATATACCCAAGGTGCACAAGCTGAATGGTTGCACATGCAGATCGGTGGAAGTTTTGAAAGAACATCTTAG 834 45.8 MDPPLVNESSFSAANPSSYSLAAIWPFVGEHGGSALGLRMTNFGQNLGGFLESSTNRDGSMEESTVTEQSAGGRKRKDVSSEDESSRMVSTSSANQLSNSDGKRMKVVESRDENGGIKAEVEPSSADGKKLAEDSSKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKTLQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLETVNSRMNISPGIEGFTIKNIVNQQYDAAGILYGSQAAREYTQGAQAEWLHMQIGGSFERTS 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1222942 1226892 + Hsped.09g01540.1 Hepe09g0154 578838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0154 277 MobiDBLite consensus disorder prediction 69 84 - -
Hepe09g0154 277 MobiDBLite consensus disorder prediction 51 163 - -
Hepe09g0154 277 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 59 232 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Hepe09g0154 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 224 IPR036638 GO:0046983(InterPro)
Hepe09g0154 277 FunFam Basic helix-loop-helix transcription factor 151 223 - -
Hepe09g0154 277 MobiDBLite consensus disorder prediction 85 103 - -
Hepe09g0154 277 Pfam Helix-loop-helix DNA-binding domain 158 205 IPR011598 GO:0046983(InterPro)
Hepe09g0154 277 SMART finulus 160 210 IPR011598 GO:0046983(InterPro)
Hepe09g0154 277 MobiDBLite consensus disorder prediction 51 68 - -
Hepe09g0154 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 204 IPR011598 GO:0046983(InterPro)
Hepe09g0154 277 Coils Coil 201 221 - -
Hepe09g0154 277 Gene3D - 151 225 IPR036638 GO:0046983(InterPro)
Hepe09g0154 277 MobiDBLite consensus disorder prediction 104 163 - -
Hepe09g0154 277 CDD bHLH_AtBPE_like 144 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe09g0154 Hepe-Chr9:1222942 Hepe10g1832 Hepe-Chr10:55051312 9.92e-40 dispersed
Hepe09g0154 Hepe-Chr9:1222942 Hepe08g1558 Hepe-Chr8:21104652 1.06e-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56319 PF00010 HLH 1.10E-08 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0154 - - - 0.0