Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0164 ATGGCGACGGTTCGGGAGCTCTTCCGGCGGAGCCCCACCGAAGAACTTGGTGGGGTTTCTGATGATTTGAATCAGGGTAGTTCGGTGGAGCTTCATGTTCTTGCTGTTGATGATAGCCTTGTCGATCGGAAGGTTATTGAGCGGTTGCTGAAGATCTCTTCATGTAAAGTGACTGCTGTTGAGAGTGGGAGAAGTGCTCTGCAATATCTGGGATTAGATGGTGAAGCTAGCTCTGTTCAGTTTAATGGTTTGAAGGTGAATCTCATCATCACAGATTACTCCATGCCTGAAATGACAGGATATGAACTGCTCAAGAAGATCAAGGAATCGTCGGCTTTCAGGGAGGTTCCTGTTGTGATAATGTCATCGGAGAATATTTTGGCTCGAATAGACAATTGCTTGAAGGAAGGGGCTGAAGAATTCATAGTGAAGCCTGTGAAACTGTCTGATGTGAAACGATTGAAAGATTTCATTATGAAAGGAGAAGATGGAGGGAAGAAGAAAATTGGTGTTAAGAGGAAGCTCCACCTTGATCTTGATCTTGATCTCGATCACCACCCCTTGTCTCCGGGGTCTAAGACGTTGTCGGTGGCAACTTTCGATCATTGCCAAGGATTTCTGCAACGATCACCGCGGATCACATGTTCATCAAAGAAACCTAGGTTCGTCAATGGCGACTAA 681 45.67 MATVRELFRRSPTEELGGVSDDLNQGSSVELHVLAVDDSLVDRKVIERLLKISSCKVTAVESGRSALQYLGLDGEASSVQFNGLKVNLIITDYSMPEMTGYELLKKIKESSAFREVPVVIMSSENILARIDNCLKEGAEEFIVKPVKLSDVKRLKDFIMKGEDGGKKKIGVKRKLHLDLDLDLDHHPLSPGSKTLSVATFDHCQGFLQRSPRITCSSKKPRFVNGD 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1312143 1314509 - Hsped.09g01640.1 Hepe09g0164 578848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0164 226 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 165 IPR045279 GO:0009736(InterPro)
Hepe09g0164 226 ProSiteProfiles Response regulatory domain profile. 32 159 IPR001789 GO:0000160(InterPro)
Hepe09g0164 226 CDD REC_typeA_ARR 33 154 - -
Hepe09g0164 226 Pfam Response regulator receiver domain 33 151 IPR001789 GO:0000160(InterPro)
Hepe09g0164 226 Gene3D - 31 184 - -
Hepe09g0164 226 SUPERFAMILY CheY-like 31 154 IPR011006 -
Hepe09g0164 226 SMART REC_2 31 155 IPR001789 GO:0000160(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0164 K14492 - - csv:101214143 303.523
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0485 Hepe-Chr4:56344491 Hepe09g0164 Hepe-Chr9:1312143 1.30e-46 dispersed
Hepe05g0710 Hepe-Chr5:12677465 Hepe09g0164 Hepe-Chr9:1312143 1.05e-49 dispersed
Hepe09g0164 Hepe-Chr9:1312143 Hepe09g0490 Hepe-Chr9:4561601 2.02e-09 dispersed
Hepe10g1680 Hepe-Chr10:53515929 Hepe09g0164 Hepe-Chr9:1312143 1.18e-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g678 Blo04g00749 Blo16g00206 . . . Bpe13g00265 Bma06g00194 . . . Cma10g00154 . Car10g00145 . Sed08g0172 . . Bhi02g00384 Tan09g2194 Cmetu02g1807 . Hepe09g0164 . . Cla06g01631 Cam06g1813 Cec06g1863 Cco06g1869 Clacu06g1772 Cmu06g1714 Cre06g2534 . . Cone13ag0113 Cone19ag0116 . . . . . . . Bda14g00828 . Bpe15g00623 Bma03g00802 . . Cmo10g00165 . . . . . . Cpe18g00823 . . . . . . . . . . . . . . Lsi06g01513 Csa01g00186 Chy02g02547 Cme02g01933
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0595 . 59 385 Response Regulator Gene Family AT3G16857 52.3 2.8e-60 230.3
Hepe10g0068 . 52 256 Response Regulator Gene Family AT3G16857 52.4 4.3e-53 206.5
Hepe08g2484 . 17 338 Response Regulator Gene Family AT4G31920 57.1 1.5e-81 300.8
Hepe05g1404 . 16 271 Response Regulator Gene Family AT4G31920 53.7 5.0e-69 259.2
Hepe10g0068 . 11 259 Response Regulator Gene Family AT4G31920 51.6 1.8e-63 240.7
Hepe01g1979 . 93 257 Response Regulator Gene Family AT1G67710 54.7 6.1e-41 165.6
Hepe05g1404 . 99 262 Response Regulator Gene Family AT1G67710 55.3 5.2e-40 162.5
Hepe03g0069 . 1 161 Response Regulator Gene Family AT1G67710 52.7 6.3e-38 155.6
Hepe09g0595 . 16 390 Response Regulator Gene Family AT2G25180 53.3 7.8e-92 335.1
Hepe08g2484 . 17 348 Response Regulator Gene Family AT2G25180 56.5 6.2e-89 325.5
Hepe05g1404 . 8 291 Response Regulator Gene Family AT2G25180 54.7 3.2e-77 286.6
Hepe10g0068 . 11 256 Response Regulator Gene Family AT2G25180 55.6 2.7e-68 256.9
Hepe10g0068 . 72 259 Response Regulator Gene Family AT2G01760 50.5 4.5e-46 182.2
Hepe08g2484 . 79 278 Response Regulator Gene Family AT2G01760 50.7 2.4e-39 159.8
Hepe10g0068 . 9 258 Response Regulator Gene Family AT5G58080 50.6 1.2e-61 235.0
Hepe05g1404 . 18 242 Response Regulator Gene Family AT4G16110 67.8 9.9e-80 295.0
Hepe01g1979 . 11 235 Response Regulator Gene Family AT4G16110 59.1 1.6e-61 234.6
Hepe10g0068 . 10 235 Response Regulator Gene Family AT4G16110 54.4 9.6e-59 225.3
Hepe08g2484 . 18 264 Response Regulator Gene Family AT4G16110 54.8 1.9e-54 211.1
Hepe09g0595 . 17 249 Response Regulator Gene Family AT4G16110 64.1 3.2e-54 210.3
Hepe03g0069 . 1 141 Response Regulator Gene Family AT4G16110 56.4 1.8e-36 151.4
Hepe09g0164 . 15 175 Response Regulator Gene Family AT3G48100 69.3 7.6e-54 207.2
Hepe10g1680 . 30 189 Response Regulator Gene Family AT3G48100 54.9 7.3e-41 164.1
Hepe02g2525 . 213 353 Response Regulator Gene Family AT3G48100 60.3 9.6e-41 163.7
Hepe05g0710 . 4 149 Response Regulator Gene Family AT3G48100 56.2 1.6e-40 162.9
Hepe04g0485 . 9 158 Response Regulator Gene Family AT3G48100 56.0 2.1e-40 162.5
Hepe01g0986 . 2 180 Response Regulator Gene Family AT3G48100 51.4 2.4e-39 159.1
Hepe02g2242 . 19 163 Response Regulator Gene Family AT3G48100 56.2 5.8e-38 154.5
Hepe09g0164 . 28 169 Response Regulator Gene Family AT1G59940 65.8 4.4e-49 192.2
Hepe10g1680 . 24 206 Response Regulator Gene Family AT1G59940 56.5 2.9e-48 189.5
Hepe02g2525 . 172 350 Response Regulator Gene Family AT1G59940 55.5 8.1e-43 171.4
Hepe05g0710 . 10 149 Response Regulator Gene Family AT1G59940 59.3 1.7e-40 163.7
Hepe01g0637 . 18 149 Response Regulator Gene Family AT1G59940 62.1 4.1e-39 159.1
Hepe04g0485 . 11 156 Response Regulator Gene Family AT1G59940 54.8 3.5e-38 156.0
Hepe01g0986 . 12 152 Response Regulator Gene Family AT1G59940 60.3 4.6e-38 155.6
Hepe02g2242 . 19 161 Response Regulator Gene Family AT1G59940 54.9 1.7e-37 153.7
Hepe09g0164 . 30 169 Response Regulator Gene Family AT1G10470 69.9 2.6e-49 192.6
Hepe10g1680 . 24 222 Response Regulator Gene Family AT1G10470 55.4 1.7e-48 189.9
Hepe02g2525 . 207 350 Response Regulator Gene Family AT1G10470 59.0 1.7e-40 163.3
Hepe05g0710 . 12 149 Response Regulator Gene Family AT1G10470 60.1 2.2e-40 162.9
Hepe04g0485 . 17 156 Response Regulator Gene Family AT1G10470 59.3 4.1e-39 158.7
Hepe01g0637 . 20 149 Response Regulator Gene Family AT1G10470 61.5 1.0e-37 154.1
Hepe02g2242 . 19 161 Response Regulator Gene Family AT1G10470 55.6 2.3e-37 152.9
Hepe09g0164 . 15 175 Response Regulator Gene Family AT3G48100 69.3 7.6e-54 207.2
Hepe10g1680 . 30 189 Response Regulator Gene Family AT3G48100 54.9 7.3e-41 164.1
Hepe02g2525 . 213 353 Response Regulator Gene Family AT3G48100 60.3 9.6e-41 163.7
Hepe05g0710 . 4 149 Response Regulator Gene Family AT3G48100 56.2 1.6e-40 162.9
Hepe04g0485 . 9 158 Response Regulator Gene Family AT3G48100 56.0 2.1e-40 162.5
Hepe01g0986 . 2 180 Response Regulator Gene Family AT3G48100 51.4 2.4e-39 159.1
Hepe02g2242 . 19 163 Response Regulator Gene Family AT3G48100 56.2 5.8e-38 154.5
Hepe09g0164 . 26 178 Response Regulator Gene Family AT5G62920 73.2 5.9e-54 207.6
Hepe10g1680 . 26 206 Response Regulator Gene Family AT5G62920 53.8 2.3e-42 169.1
Hepe02g2525 . 213 349 Response Regulator Gene Family AT5G62920 60.6 3.7e-40 161.8
Hepe05g0710 . 12 149 Response Regulator Gene Family AT5G62920 58.7 3.7e-40 161.8
Hepe04g0485 . 12 158 Response Regulator Gene Family AT5G62920 55.8 8.2e-40 160.6
Hepe02g2242 . 19 159 Response Regulator Gene Family AT5G62920 57.0 2.9e-37 152.1
Hepe09g0164 . 30 162 Response Regulator Gene Family AT1G19050 77.4 6.1e-52 201.1
Hepe02g2525 . 191 352 Response Regulator Gene Family AT1G19050 52.5 5.3e-40 161.4
Hepe05g0710 . 10 151 Response Regulator Gene Family AT1G19050 55.6 7.7e-39 157.5
Hepe04g0485 . 11 158 Response Regulator Gene Family AT1G19050 54.1 1.7e-38 156.4
Hepe01g0986 . 12 157 Response Regulator Gene Family AT1G19050 56.2 3.8e-38 155.2
Hepe01g0637 . 20 150 Response Regulator Gene Family AT1G19050 58.8 7.2e-37 151.0
Hepe05g0710 . 3 153 Response Regulator Gene Family AT2G41310 74.8 1.4e-57 219.9
Hepe04g0485 . 8 272 Response Regulator Gene Family AT2G41310 50.9 1.2e-56 216.9
Hepe02g2525 . 203 351 Response Regulator Gene Family AT2G41310 66.4 2.1e-50 196.1
Hepe01g0986 . 6 183 Response Regulator Gene Family AT2G41310 50.2 4.4e-48 188.3
Hepe02g2242 . 11 160 Response Regulator Gene Family AT2G41310 59.2 1.0e-44 177.2
Hepe01g0637 . 12 150 Response Regulator Gene Family AT2G41310 56.9 2.6e-40 162.5
Hepe09g0164 . 30 160 Response Regulator Gene Family AT2G41310 61.9 4.5e-40 161.8
Hepe04g0485 . 8 272 Response Regulator Gene Family AT3G57040 52.1 1.4e-60 229.9
Hepe05g0710 . 3 155 Response Regulator Gene Family AT3G57040 75.8 1.4e-60 229.9
Hepe02g2525 . 210 351 Response Regulator Gene Family AT3G57040 68.1 6.4e-50 194.5
Hepe01g0986 . 7 156 Response Regulator Gene Family AT3G57040 68.4 1.1e-49 193.7
Hepe02g2242 . 15 160 Response Regulator Gene Family AT3G57040 61.9 9.6e-46 180.6
Hepe09g0164 . 23 160 Response Regulator Gene Family AT3G57040 58.1 3.2e-41 165.6
Hepe01g0637 . 18 150 Response Regulator Gene Family AT3G57040 57.1 1.0e-39 160.6
Hepe09g0164 . 16 178 Response Regulator Gene Family AT1G74890 69.3 1.7e-54 209.5
Hepe02g2525 . 211 344 Response Regulator Gene Family AT1G74890 61.2 7.0e-40 161.0
Hepe01g0986 . 8 157 Response Regulator Gene Family AT1G74890 58.0 1.2e-39 160.2
Hepe04g0485 . 12 151 Response Regulator Gene Family AT1G74890 58.6 4.5e-39 158.3
Hepe05g0710 . 10 149 Response Regulator Gene Family AT1G74890 58.6 7.7e-39 157.5
Hepe01g0637 . 20 146 Response Regulator Gene Family AT1G74890 60.6 2.5e-37 152.5
Hepe01g0637 . 20 151 Response Regulator Gene Family AT2G40670 68.4 1.4e-46 183.0
Hepe05g0710 . 8 149 Response Regulator Gene Family AT2G40670 57.3 1.5e-40 162.9
Hepe09g0164 . 23 160 Response Regulator Gene Family AT2G40670 59.9 6.2e-39 157.5
Hepe04g0485 . 13 158 Response Regulator Gene Family AT2G40670 51.7 7.5e-37 150.6
Hepe01g0637 . 3 151 Response Regulator Gene Family AT3G56380 66.0 6.8e-48 187.2
Hepe09g0164 . 17 160 Response Regulator Gene Family AT3G56380 59.6 1.4e-40 162.9
Hepe05g0710 . 8 149 Response Regulator Gene Family AT3G56380 54.5 1.3e-38 156.4
Hepe04g0485 . 2 158 Response Regulator Gene Family AT3G56380 53.2 2.2e-38 155.6
Hepe02g2242 . 11 157 Response Regulator Gene Family AT3G56380 52.3 4.1e-37 151.4
Hepe01g0986 . 6 147 Response Regulator Gene Family AT3G56380 54.5 9.2e-37 150.2
Hepe02g2525 . 211 352 Response Regulator Gene Family AT3G56380 54.5 9.2e-37 150.2
Hepe09g0595 . 59 385 Response Regulator Gene Family AT3G16857 52.3 2.8e-60 230.3
Hepe10g0068 . 52 256 Response Regulator Gene Family AT3G16857 52.4 4.3e-53 206.5
Hepe05g1404 . 18 242 Response Regulator Gene Family AT4G16110 67.8 9.9e-80 295.0
Hepe01g1979 . 11 235 Response Regulator Gene Family AT4G16110 59.1 1.6e-61 234.6
Hepe10g0068 . 10 235 Response Regulator Gene Family AT4G16110 54.4 9.6e-59 225.3
Hepe08g2484 . 18 264 Response Regulator Gene Family AT4G16110 54.8 1.9e-54 211.1
Hepe09g0595 . 17 249 Response Regulator Gene Family AT4G16110 64.1 3.2e-54 210.3
Hepe03g0069 . 1 141 Response Regulator Gene Family AT4G16110 56.4 1.8e-36 151.4
Hepe08g2484 . 17 338 Response Regulator Gene Family AT4G31920 57.1 1.5e-81 300.8
Hepe05g1404 . 16 271 Response Regulator Gene Family AT4G31920 53.7 5.0e-69 259.2
Hepe10g0068 . 11 259 Response Regulator Gene Family AT4G31920 51.6 1.8e-63 240.7
Hepe01g1979 . 93 257 Response Regulator Gene Family AT1G67710 54.7 6.1e-41 165.6
Hepe05g1404 . 99 262 Response Regulator Gene Family AT1G67710 55.3 5.2e-40 162.5
Hepe03g0069 . 1 161 Response Regulator Gene Family AT1G67710 52.7 6.3e-38 155.6
Hepe09g0595 . 16 390 Response Regulator Gene Family AT2G25180 53.3 7.8e-92 335.1
Hepe08g2484 . 17 348 Response Regulator Gene Family AT2G25180 56.5 6.2e-89 325.5
Hepe05g1404 . 8 291 Response Regulator Gene Family AT2G25180 54.7 3.2e-77 286.6
Hepe10g0068 . 11 256 Response Regulator Gene Family AT2G25180 55.6 2.7e-68 256.9
Hepe10g0068 . 72 259 Response Regulator Gene Family AT2G01760 50.5 4.5e-46 182.2
Hepe08g2484 . 79 278 Response Regulator Gene Family AT2G01760 50.7 2.4e-39 159.8
Hepe10g0068 . 9 258 Response Regulator Gene Family AT5G58080 50.6 1.2e-61 235.0
Hepe09g0102 . 23 210 Response Regulator Gene Family AT5G61380 76.7 9.6e-77 285.0
Hepe07g2494 . 24 129 Response Regulator Gene Family AT5G61380 73.6 2.2e-36 151.0
Hepe04g0907 . 69 206 Response Regulator Gene Family AT5G60100 76.8 2.9e-53 206.5
Hepe06g0835 . 45 182 Response Regulator Gene Family AT5G60100 60.9 1.9e-44 177.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012253 2 1 2 2 2 0 1 1 0 0 0 0 1 1 1 1 0 2 1 1 0 1 1 1 1 0 1 3 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56321 PF00072 Response_reg 4.40E-21 CL0304 Hepe TR