Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g0183 ATGCATGGGTGTCGAGGTGAGGACTCGAAACGGTCTCGGCACATGTGGTCTGGTACCCAGATCCTAGAAGCAGATGGTTCTTCTTCATCGTCTTCGTCTGCACCTAATTCGTTTTGCAAGGGTGGACGTAGGATTAGTGTTGGTGATTGTGCTCTCTTCAAATCCCCCCAAGATTCCCCACCTTTTATTGGCATAATCCGGTGGTTGACGGCTGGTAAAGATAATAAGTTAAAGTTAGGTGTGAATTGGCTTTATCGATCTTCCGAACTAAAGCTCGGCAAAGGCATCCTTTTGGAGGCGCCGCCGAACGAAGTCTTCTATTCCTTTCATAAGGATGAAATTCCTGCTGCATCTTTACTCCATCCGTGTAAAGTTGCATTCCTTCCGAAGGACGTTGAACTTCCATCAGGAATTTCGTCATTTGTGTGCCGGAGAGTGTTTGACATAAAAAATAAGTGTTTATGGTGGTTAACAGATCAGGATTATATTAATGTAAGTTCTTGA 504 44.25 MHGCRGEDSKRSRHMWSGTQILEADGSSSSSSSAPNSFCKGGRRISVGDCALFKSPQDSPPFIGIIRWLTAGKDNKLKLGVNWLYRSSELKLGKGILLEAPPNEVFYSFHKDEIPAASLLHPCKVAFLPKDVELPSGISSFVCRRVFDIKNKCLWWLTDQDYINVSS 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1453156 1454543 + Hsped.09g01830.1 Hepe09g0183 578867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g0183 167 Pfam BAH domain 45 152 IPR001025 GO:0003682(InterPro)
Hepe09g0183 167 SMART BAH_4 43 158 IPR001025 GO:0003682(InterPro)
Hepe09g0183 167 ProSiteProfiles BAH domain profile. 43 158 IPR001025 GO:0003682(InterPro)
Hepe09g0183 167 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 164 - -
Hepe09g0183 167 Gene3D - 30 167 IPR043151 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g0183 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1545 Hepe-Chr6:66158458 Hepe09g0183 Hepe-Chr9:1453156 1.81e-13 dispersed
Hepe02g1879 Hepe-Chr2:30144933 Hepe09g0183 Hepe-Chr9:1453156 1.18e-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g704 . . . . Bpe12g00585 . . Bma12g01028 . . . . Car10g00132 . Sed08g1505 . Cpe04g01543 Bhi02g00413 Tan09g2404 Cmetu02g1332 . Hepe09g0183 . . Cla06g01645 Cam06g1830 Cec06g1879 Cco06g1885 Clacu06g1789 Cmu06g1731 Cre06g2549 . . Cone13ag0127 Cone19ag0131 . . . . Blo13g00047 Blo15g00276 . . Bpe07g00824 . . Bma08g00176 . Cmo10g00147 Cmo11g00110 . . . . . Cpe18g00833 . . . . . . . . . . . . . . Lsi06g01533 Csa01g00170 Chy02g02561 Cme02g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47